Carubv10001406m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10001406m.g T022814_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NGA4
M06707_2.00 		Arabidopsis thaliana
NHHBDYCAGGTRNHWH
DWDNYACCTGRHVDDN		 Dap-seq
OMalley et al.(2016)
NGA4_col_a 		0.784 0.784
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001406m B3 38 141

Links

Other B3 family TFs
Other Capsella rubella TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30032.m000462 Ricinus communis 30032.m000462 N 0.000
30076.m004471 Ricinus communis 30076.m004471 I 0.000
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.000
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.000
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.000
ARF31 Arabidopsis thaliana AT2G36080 N 0.000
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.000
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.000
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.000
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.000
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.000
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.000
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.000
BGIOSGA036599 Oryza indica BGIOSGA036599 N 0.000
Bo01079s020 Brassica oleracea Bo01079s020 N 0.000
Bo3g003800 Brassica oleracea Bo3g003800 N 0.000
Bo3g039420 Brassica oleracea Bo3g039420 N 0.000
Bo3g064320 Brassica oleracea Bo3g064320 N 0.000
Bo4g006900 Brassica oleracea Bo4g006900 N 0.000
Bo4g035110 Brassica oleracea Bo4g035110 N 0.000
Bo4g197410 Brassica oleracea Bo4g197410 I 0.000
Bo5g136360 Brassica oleracea Bo5g136360 N 0.000
Bo6g079210 Brassica oleracea Bo6g079210 N 0.000
Bo9g176470 Brassica oleracea Bo9g176470 N 0.000
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.000
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.000
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.000
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.000
Bra000434 Brassica rapa Bra000434 N 0.000
Bra001411 Brassica rapa Bra001411 N 0.000
Bra003482 Brassica rapa Bra003482 N 0.000
Bra004501 Brassica rapa Bra004501 N 0.000
Bra005301 Brassica rapa Bra005301 N 0.000
Bra005886 Brassica rapa Bra005886 N 0.000
Bra017262 Brassica rapa Bra017262 N 0.000
Bra034828 Brassica rapa Bra034828 N 0.000
Bra040478 Brassica rapa Bra040478 I 0.000
Bra041023 Brassica rapa Bra041023 N 0.000
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.000
BRADI4G25170 Brachypodium distachyon BRADI4G25170 N 0.000
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.000
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.000
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.000
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.000
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.000
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.000
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.000
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.000
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.000
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.000
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.000
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.000
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.000
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.000
Ca_00826 Cicer arietinum Ca_00826 N 0.000
Ca_01368 Cicer arietinum Ca_01368 I 0.000
Ca_25633 Cicer arietinum Ca_25633 I 0.000
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.000
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.000
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.000
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.000
Cla006845 Citrullus lanatus Cla006845 I 0.000
Cla014858 Citrullus lanatus Cla014858 N 0.000
Cla017937 Citrullus lanatus Cla017937 I 0.000
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.000
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.000
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.000
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.000
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.000
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.000
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.000
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.000
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.000
F775_02500 Aegilops tauschii F775_02500 N 0.000
F775_31255 Aegilops tauschii F775_31255 N 0.000
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.000
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.000
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.000
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.000
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.000
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.000
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.000
GLYMA03G35700 Glycine max GLYMA03G35700 N 0.000
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.000
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.000
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.000
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.000
GLYMA19G38340 Glycine max GLYMA19G38340 N 0.000
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.000
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.000
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.000
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.000
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.000
Gorai.006G152400 Gossypium raimondii Gorai.006G152400 N 0.000
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.000
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.000
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.000
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.000
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.000
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.000
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.000
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.000
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.000
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.000
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.000
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.000
GSMUA_Achr3G19210_001 Musa acuminata GSMUA_Achr3G19210_001 N 0.000
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.000
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.000
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.000
GSMUA_Achr9G02600_001 Musa acuminata GSMUA_Achr9G02600_001 I 0.000
LjSGA_011266.1 Lotus japonicus LjSGA_011266.1 N 0.000
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.000
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.000
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.000
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.000
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.000
LPERR11G03050 Leersia perrieri LPERR11G03050 N 0.000
LPERR12G03290 Leersia perrieri LPERR12G03290 N 0.000
Lus10004226.g Linum usitatissimum Lus10004226.g N 0.000
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.000
MDP0000229742 Malus domestica MDP0000229742 N 0.000
mgf018965m Mimulus guttatus mgf018965m N 0.000
mgf019085m Mimulus guttatus mgf019085m N 0.000
mgf023769m Mimulus guttatus mgf023769m N 0.000
MLOC_11014 Hordeum vulgare MLOC_11014 N 0.000
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.000
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.000
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.000
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.000
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.000
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.000
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.000
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.000
NGA1 Arabidopsis thaliana AT2G46870 N 0.000
OB02G35380 Oryza brachyantha OB02G35380 I 0.000
OB03G11610 Oryza brachyantha OB03G11610 N 0.000
OB10G24100 Oryza brachyantha OB10G24100 N 0.000
OB11G12920 Oryza brachyantha OB11G12920 N 0.000
OB12G13420 Oryza brachyantha OB12G13420 N 0.000
OBART02G28100 Oryza barthii OBART02G28100 N 0.000
OBART03G01650 Oryza barthii OBART03G01650 N 0.000
OBART04G22880 Oryza barthii OBART04G22880 I 0.000
OBART10G17010 Oryza barthii OBART10G17010 N 0.000
OBART11G03590 Oryza barthii OBART11G03590 N 0.000
OBART12G03490 Oryza barthii OBART12G03490 N 0.000
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.000
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.000
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.000
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.000
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.000
OGLUM12G04180 Oryza glumaepatula OGLUM12G04180 N 0.000
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.000
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.000
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.000
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.000
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.000
OMERI11G03310 Oryza meridionalis OMERI11G03310 N 0.000
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.000
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.000
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.000
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.000
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.000
ONIVA12G03130 Oryza nivara ONIVA12G03130 N 0.000
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.000
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.000
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.000
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.000
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.000
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.000
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.000
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.000
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.000
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.000
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.000
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.000
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.000
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.000
ORGLA12G0033700 Oryza glaberrima ORGLA12G0033700 N 0.000
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.000
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.000
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.000
ORUFI12G03970 Oryza rufipogon ORUFI12G03970 N 0.000
OS02G0683500 Oryza sativa OS02G0683500 N 0.000
OS03G0120900 Oryza sativa OS03G0120900 N 0.000
OS04G0581400 Oryza sativa OS04G0581400 I 0.000
OS10G0537100 Oryza sativa OS10G0537100 N 0.000
OS11G0156000 Oryza sativa OS11G0156000 N 0.000
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.000
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.000
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.000
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.000
Pavir.Ha01761 Panicum virgatum Pavir.Ha01761 N 0.000
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N 0.000
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.000
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.000
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.000
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.000
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.000
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.000
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.000
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.000
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.000
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.000
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.000
PK04952.1 Cannabis sativa PK04952.1 I 0.000
PK11025.1 Cannabis sativa PK11025.1 I 0.000
Pm024248 Prunus mume Pm024248 I 0.000
Pm028725 Prunus mume Pm028725 N 0.000
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.000
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.000
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.000
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.000
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.000
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.000
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.000
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.000
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.000
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.000
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.000
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.000
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.000
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.000
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.000
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.000
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.000
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.000
Sb05g003450 Sorghum bicolor Sb05g003450 N 0.000
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.000
Sb08g003550 Sorghum bicolor Sb08g003550 N 0.000
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.000
Si010849m.g Setaria italica Si010849m.g N 0.000
Si011823m.g Setaria italica Si011823m.g N 0.000
Si027632m.g Setaria italica Si027632m.g N 0.000
Si036864m.g Setaria italica Si036864m.g N 0.000
Si039972m.g Setaria italica Si039972m.g N 0.000
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.000
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.000
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.000
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.000
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.000
TCM_005014 Theobroma cacao TCM_005014 I 0.000
TCM_015590 Theobroma cacao TCM_015590 I 0.000
TCM_022729 Theobroma cacao TCM_022729 N 0.000
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.000
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.000
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.000
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.000
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.000
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.000
Traes_2AL_25382F498 Triticum aestivum Traes_2AL_25382F498 N 0.000
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.000
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.000
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.000
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.000
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.857
Traes_4AL_4F2E6EF28 Triticum aestivum Traes_4AL_4F2E6EF28 N 0.000
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.000
Traes_4BS_5FECB39FA Triticum aestivum Traes_4BS_5FECB39FA N 0.000
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.000
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.000
Traes_4DS_E6210A614 Triticum aestivum Traes_4DS_E6210A614 N 0.000
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.000
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.000
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.000
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.000
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.000
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.000
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.000
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.000