Pavir.J33226 (Panicum virgatum)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Pavir.J33226 T165481_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J33226.1.p CSD 7 73

Links

Other CSD family TFs
Other Panicum virgatum TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00017p00206510 Amborella trichopoda AMTR_s00017p00206510 N 0.742
BGIOSGA007226 Oryza indica BGIOSGA007226 N 0.879
BGIOSGA027713 Oryza indica BGIOSGA027713 N 0.727
Bo7g049880 Brassica oleracea Bo7g049880 I 0.742
BRADI1G02640 Brachypodium distachyon BRADI1G02640 N 0.803
BRADI1G02650 Brachypodium distachyon BRADI1G02650 N 0.788
BRADI2G07090 Brachypodium distachyon BRADI2G07090 N 0.758
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N 0.864
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.773
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.788
Ca_11038 Cicer arietinum Ca_11038 N 0.727
CHLREDRAFT_126810 Chlamydomonas reinhardtii CHLREDRAFT_126810 N 0.742
chr3.CM0112.180.nd Lotus japonicus chr3.CM0112.180.nd N 0.712
chr6.CM0045.280.nd Lotus japonicus chr6.CM0045.280.nd N 0.712
Ciclev10002696m.g Citrus clementina Ciclev10002696m.g N 0.727
Cla016088 Citrullus lanatus Cla016088 N 0.712
Cucsa.381750 Cucumis sativus Cucsa.381750 N 0.712
estExt_fgenesh1_pg.C_10541 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_10541 N 0.773
estExt_fgeneshCV_pm.C_10002 Chlorella vulgaris estExt_fgeneshCV_pm.C_10002 N 0.773
estExt_Genewise1Plus.C_10818 Volvox carteri estExt_Genewise1Plus.C_10818 N 0.727
ETH_00029175 Eimeria tenella ETH_00029175 N 0.708
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.727
e_gw1.1.536.1 Chlorella vulgaris e_gw1.1.536.1 N 0.758
fgenesh1_pg.1_#_433 Coccomyxa subellipsoidea C169 fgenesh1_pg.1_#_433 N 0.758
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N 0.742
gene14603-v1.0-hybrid Fragaria vesca gene14603-v1.0-hybrid N 0.712
GLYMA11G11290 Glycine max GLYMA11G11290 N 0.758
GLYMA12G03470 Glycine max GLYMA12G03470 N 0.773
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.712
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.712
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I 0.727
Gorai.008G062500 Gossypium raimondii Gorai.008G062500 N 0.712
GRMZM2G389768 Zea mays GRMZM2G389768 N 1.000
GRMZM5G895313 Zea mays GRMZM5G895313 N 0.712
IGS.gm_9_00317 Chlorella NC64A IGS.gm_9_00317 N 0.721
LPERR02G01370 Leersia perrieri LPERR02G01370 N 0.864
LPERR08G02000 Leersia perrieri LPERR08G02000 N 0.712
Lus10005066.g Linum usitatissimum Lus10005066.g N 0.742
Lus10025058.g Linum usitatissimum Lus10025058.g N 0.727
Lus10027839.g Linum usitatissimum Lus10027839.g N 0.742
MDP0000121628 Malus domestica MDP0000121628 N 0.712
MDP0000155077 Malus domestica MDP0000155077 N 0.758
MDP0000202739 Malus domestica MDP0000202739 N 0.758
MDP0000225222 Malus domestica MDP0000225222 N 0.742
mgf001526m Mimulus guttatus mgf001526m N 0.727
mgf014458m Mimulus guttatus mgf014458m N 0.727
mgf015980m Mimulus guttatus mgf015980m I 0.758
OB02G23180 Oryza brachyantha OB02G23180 I 0.718
OBART02G01600 Oryza barthii OBART02G01600 N 0.864
OGLUM02G01470 Oryza glumaepatula OGLUM02G01470 N 0.879
OGLUM08G01920 Oryza glumaepatula OGLUM08G01920 N 0.727
OMERI02G00930 Oryza meridionalis OMERI02G00930 N 0.879
OMERI08G01940 Oryza meridionalis OMERI08G01940 N 0.727
ONIVA02G01490 Oryza nivara ONIVA02G01490 N 0.894
ONIVA08G01720 Oryza nivara ONIVA08G01720 N 0.727
OPUNC02G01060 Oryza punctata OPUNC02G01060 N 0.879
orange1.1g030905m.g Citrus sinensis orange1.1g030905m.g N 0.727
ORGLA02G0014700 Oryza glaberrima ORGLA02G0014700 N 0.864
ORGLA08G0012100 Oryza glaberrima ORGLA08G0012100 N 0.727
ORUFI02G01580 Oryza rufipogon ORUFI02G01580 N 0.879
ORUFI08G02050 Oryza rufipogon ORUFI08G02050 N 0.727
OS02G0121100 Oryza sativa OS02G0121100 N 0.879
OS08G0129200 Oryza sativa OS08G0129200 N 0.727
Pavir.Ab00211 Panicum virgatum Pavir.Ab00211 N 0.984
Pavir.J33349 Panicum virgatum Pavir.J33349 N 0.985
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N 0.742
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.712
Phatr3_J12737 Phaeodactylum tricornutum Phatr3_J12737 N 0.712
PK01533.1 Cannabis sativa PK01533.1 N 0.758
PK03316.1 Cannabis sativa PK03316.1 N 0.712
Pm020837 Prunus mume Pm020837 I 0.727
Pm026767 Prunus mume Pm026767 N 0.712
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N 0.788
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.727
PRUPE_ppa010531mg Prunus persica PRUPE_ppa010531mg N 0.712
SapurV1A.0117s0150 Salix purpurea SapurV1A.0117s0150 N 0.788
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.727
Sb04g001720 Sorghum bicolor Sb04g001720 N 1.000
Sb06g029650 Sorghum bicolor Sb06g029650 N 0.712
SELMODRAFT_123455 Selaginella moellendorffii SELMODRAFT_123455 N 0.709
SELMODRAFT_154869 Selaginella moellendorffii SELMODRAFT_154869 N 0.712
Solyc01g111300.2 Solanum lycopersicum Solyc01g111300.2 N 0.742
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.742
TCM_000198 Theobroma cacao TCM_000198 N 0.712
Traes_6AS_539B381F1 Triticum aestivum Traes_6AS_539B381F1 N 0.879
TRIUR3_31144 Triticum urartu TRIUR3_31144 N 0.773
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.803
VIT_04s0023g03520 Vitis vinifera VIT_04s0023g03520 N 0.727