Q86SD7_PODCA (Podocoryne carnea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Q86SD7_PODCA T226947_2.00 HughesLab (2013-Jun-13)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q86SD7_PODCA
M02213_2.00		 Podocoryne carnea
NNTAATTADN
NHTAATTANN		 PBM
Weirauch et al.(2014)
pTH6136		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02213_2.00 Homeodomain 1 57

DNA Binding Domains

Protein ID Domain From To Sequence
Q86SD7_PODCA Homeodomain 134 190

Links

Other Homeodomain family TFs
Other Podocoryne carnea TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30024.m001746 Ricinus communis 30024.m001746 N 0.000
30131.m007244 Ricinus communis 30131.m007244 N 0.000
Aquca_014_00674 Aquilegia coerulea Aquca_014_00674 N 0.000
Bo3g179450 Brassica oleracea Bo3g179450 N 0.000
Bo5g078760 Brassica oleracea Bo5g078760 N 0.000
Bo6g022200 Brassica oleracea Bo6g022200 N 0.000
Bostr.26675s0133 Boechera stricta Bostr.26675s0133 N 0.000
Bra014251 Brassica rapa Bra014251 N 0.000
Bra018848 Brassica rapa Bra018848 N 0.000
Cagra.0860s0005 Capsella grandiflora Cagra.0860s0005 N 0.000
Carubv10008999m.g Capsella rubella Carubv10008999m.g N 0.000
cassava1375.valid.m1 Manihot esculenta cassava1375.valid.m1 N 0.000
cassava1376.valid.m1 Manihot esculenta cassava1376.valid.m1 N 0.000
cassava13860.valid.m1 Manihot esculenta cassava13860.valid.m1 N 0.000
cassava20989.m1 Manihot esculenta cassava20989.m1 N 0.000
cassava31043.valid.m1 Manihot esculenta cassava31043.valid.m1 N 0.000
Ca_11133 Cicer arietinum Ca_11133 N 0.000
chr1.CM0794.360.nd Lotus japonicus chr1.CM0794.360.nd N 0.000
chr2.CM0018.90.nc Lotus japonicus chr2.CM0018.90.nc N 0.000
chr3.CM0460.90.nd Lotus japonicus chr3.CM0460.90.nd N 0.000
Ciclev10015219m.g Citrus clementina Ciclev10015219m.g N 0.000
Ciclev10031389m.g Citrus clementina Ciclev10031389m.g N 0.000
Cla006433 Citrullus lanatus Cla006433 N 0.000
Cla020893 Citrullus lanatus Cla020893 N 0.000
Cucsa.055340 Cucumis sativus Cucsa.055340 N 0.000
Cucsa.308180 Cucumis sativus Cucsa.308180 N 0.000
Eucgr.B03716 Eucalyptus grandis Eucgr.B03716 N 0.000
Eucgr.G03258 Eucalyptus grandis Eucgr.G03258 N 0.000
evm.TU.supercontig_197.7 Carica papaya evm.TU.supercontig_197.7 N 0.000
evm.TU.supercontig_84.12 Carica papaya evm.TU.supercontig_84.12 N 0.000
GLYMA01G43620 Glycine max GLYMA01G43620 N 0.000
GLYMA11G01850 Glycine max GLYMA11G01850 N 0.000
GLYMA11G10170 Glycine max GLYMA11G10170 N 0.000
GLYMA12G02490 Glycine max GLYMA12G02490 N 0.000
Gorai.006G125700 Gossypium raimondii Gorai.006G125700 N 0.000
Gorai.012G080500 Gossypium raimondii Gorai.012G080500 N 0.000
Gorai.013G015100 Gossypium raimondii Gorai.013G015100 N 0.000
Gorai.013G252600 Gossypium raimondii Gorai.013G252600 N 0.000
Lus10009717.g Linum usitatissimum Lus10009717.g N 0.000
Lus10022418.g Linum usitatissimum Lus10022418.g N 0.000
mgf008315m Mimulus guttatus mgf008315m N 0.000
mgf022906m Mimulus guttatus mgf022906m N 0.000
MTR_4g076140 Medicago truncatula MTR_4g076140 N 0.000
MTR_5g009080 Medicago truncatula MTR_5g009080 N 0.000
orange1.1g011736m.g Citrus sinensis orange1.1g011736m.g N 0.000
orange1.1g014413m.g Citrus sinensis orange1.1g014413m.g N 0.000
PGSC0003DMG400004649 Solanum tuberosum PGSC0003DMG400004649 N 0.000
PGSC0003DMG400022709 Solanum tuberosum PGSC0003DMG400022709 N 0.000
PK02707.1 Cannabis sativa PK02707.1 N 0.000
Pm012190 Prunus mume Pm012190 N 0.000
Pm016466 Prunus mume Pm016466 N 0.000
Pm029840 Prunus mume Pm029840 N 0.000
POPTR_0001s06090 Populus trichocarpa POPTR_0001s06090 N 0.000
POPTR_0003s20100 Populus trichocarpa POPTR_0003s20100 N 0.000
PRUPE_ppa005243mg Prunus persica PRUPE_ppa005243mg N 0.000
PRUPE_ppa005439mg Prunus persica PRUPE_ppa005439mg N 0.000
SapurV1A.0009s0760 Salix purpurea SapurV1A.0009s0760 N 0.000
SapurV1A.0415s0050 Salix purpurea SapurV1A.0415s0050 N 0.000
SapurV1A.0504s0280 Salix purpurea SapurV1A.0504s0280 N 0.000
SapurV1A.1723s0080 Salix purpurea SapurV1A.1723s0080 N 0.000
SCL3 Arabidopsis thaliana AT1G50420 N 0.000
SCL3 Arabidopsis lyrata fgenesh2_kg.1__4122__AT1G50420.1 N 0.000
SCL3 Vitis vinifera VIT_06s0009g02390 N 0.000
SCL3 Populus trichocarpa POPTR_0009s05330 N 0.000
Solyc01g008910.2 Solanum lycopersicum Solyc01g008910.2 N 0.000
Solyc12g099900.1 Solanum lycopersicum Solyc12g099900.1 N 0.000
TCM_040833 Theobroma cacao TCM_040833 N 0.000
TCM_042392 Theobroma cacao TCM_042392 N 0.000
Thhalv10011447m.g Eutrema salsugineum Thhalv10011447m.g N 0.000
VIT_13s0019g01220 Vitis vinifera VIT_13s0019g01220 N 0.000