chr4.CM0087.920.nd (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr4.CM0087.920.nd T259333_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.809 0.809
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0087.920.nd MADS box 10 56

Links

Other MADS box family TFs
Other Lotus japonicus TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29813.m001508 Ricinus communis 29813.m001508 I 0.783
30138.m004061 Ricinus communis 30138.m004061 I 0.833
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.717
AGL30 Arabidopsis thaliana AT2G03060 I 0.717
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.723
AGL65 Arabidopsis thaliana AT1G18750 D 0.792
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.792
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.812
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.804
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.787
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.783
Bo8g068060 Brassica oleracea Bo8g068060 I 0.854
Bo8g104060 Brassica oleracea Bo8g104060 I 0.854
Bo9g072860 Brassica oleracea Bo9g072860 N 0.717
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.702
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.792
Bra016544 Brassica rapa Bra016544 I 0.854
Bra025685 Brassica rapa Bra025685 I 0.851
Bra031049 Brassica rapa Bra031049 I 0.854
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.809
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.702
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.771
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.771
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.702
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.745
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.745
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.812
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.833
Ca_16376 Cicer arietinum Ca_16376 I 0.739
Ca_18082 Cicer arietinum Ca_18082 I 0.717
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.792
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.745
Cla010361 Citrullus lanatus Cla010361 I 0.766
Cla018884 Citrullus lanatus Cla018884 I 0.745
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.745
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.804
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.812
F775_13266 Aegilops tauschii F775_13266 I 0.826
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.851
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.935
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.857
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.833
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.723
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.761
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.702
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.745
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.717
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.826
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.812
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.745
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.745
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.851
MDP0000146231 Malus domestica MDP0000146231 I 0.739
MDP0000146415 Malus domestica MDP0000146415 I 0.733
MDP0000147667 Malus domestica MDP0000147667 I 0.702
MDP0000193129 Malus domestica MDP0000193129 I 0.812
MDP0000773068 Malus domestica MDP0000773068 I 0.733
MDP0000919323 Malus domestica MDP0000919323 I 0.733
mgf000945m Mimulus guttatus mgf000945m I 0.708
mgf004425m Mimulus guttatus mgf004425m I 0.708
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.804
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.936
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.717
OBART11G21780 Oryza barthii OBART11G21780 N 0.804
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.826
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.826
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.783
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.787
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.792
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.745
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.804
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.804
OS11G0658700 Oryza sativa OS11G0658700 N 0.804
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.809
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.809
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.826
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.830
PGSC0003DMG400019525 Solanum tuberosum PGSC0003DMG400019525 N 0.702
PK03147.1 Cannabis sativa PK03147.1 I 0.745
PK21701.1 Cannabis sativa PK21701.1 I 0.812
Pm006479 Prunus mume Pm006479 I 0.717
Pm024895 Prunus mume Pm024895 I 0.809
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.745
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.739
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.809
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.717
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.739
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.723
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.826
Si028357m.g Setaria italica Si028357m.g N 0.761
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.729
TCM_011687 Theobroma cacao TCM_011687 I 0.761
TCM_014051 Theobroma cacao TCM_014051 I 0.872
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.717
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.833
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.717
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.739
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.809
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.826
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.826
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.826
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.826