MTR_1g101600 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_1g101600 T002803_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.735 0.900
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.735 0.900
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.724 0.900
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.724 0.900
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.724 0.900
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.724 0.900
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.723 0.900
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.723 0.900
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.723 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES62573 AP2 39 90

Links

Other AP2 family TFs
Other Medicago truncatula TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N
evm.TU.supercontig_4.187 Carica papaya evm.TU.supercontig_4.187 N
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I
evm.TU.contig_43908 Carica papaya evm.TU.contig_43908 N
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I
evm.TU.supercontig_100.9 Carica papaya evm.TU.supercontig_100.9 N
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I
evm.TU.supercontig_185.4 Carica papaya evm.TU.supercontig_185.4 N
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N
evm.TU.contig_28448.2 Carica papaya evm.TU.contig_28448.2 N
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I
Ca_13275 Cicer arietinum Ca_13275 I
Ca_06495 Cicer arietinum Ca_06495 I
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I
MDP0000925348 Malus domestica MDP0000925348 I
MTR_3g065100 Medicago truncatula MTR_3g065100 I
Pm004396 Prunus mume Pm004396 I
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I
TCM_026842 Theobroma cacao TCM_026842 I