gene26463-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene26463-v1.0-hybrid T008435_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.815 0.980
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.765 0.900
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.685 0.780
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.681 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna26463.1-v1.0-hybrid AP2 28 79

Links

Other AP2 family TFs
Other Fragaria vesca TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.811
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.704
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.815
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.765
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.685
DREB2F Arabidopsis thaliana AT3G57600 D 0.765
DREB2G Arabidopsis thaliana AT5G18450 D 0.685
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.765
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.685
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.821
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.678
Bo4g111040 Brassica oleracea Bo4g111040 I 0.750
Bo6g073020 Brassica oleracea Bo6g073020 I 0.769
Bo6g086320 Brassica oleracea Bo6g086320 I 0.679
Bo8g092010 Brassica oleracea Bo8g092010 I 0.768
Bo9g155940 Brassica oleracea Bo9g155940 I 0.685
Bra002159 Brassica rapa Bra002159 I 0.685
Bra003752 Brassica rapa Bra003752 I 0.679
Bra007341 Brassica rapa Bra007341 I 0.768
Bra014617 Brassica rapa Bra014617 I 0.750
PK07402.1 Cannabis sativa PK07402.1 D 0.681
PK08602.1 Cannabis sativa PK08602.1 D 0.815
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I 0.765
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.678
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.678
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.765
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.677
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.807
Ca_07264 Cicer arietinum Ca_07264 I 0.825
Cla012194 Citrullus lanatus Cla012194 I 0.679
Cla017778 Citrullus lanatus Cla017778 I 0.789
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.678
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.815
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.678
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.815
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.781
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.801
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.689
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.759
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.685
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.678
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.821
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.825
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.821
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.821
GLYMA19G04461 Glycine max GLYMA19G04461 I 0.781
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.825
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.809
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.678
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.814
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.816
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.816
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.681
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.683
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.683
chr1.CM0318.570.nd Lotus japonicus chr1.CM0318.570.nd I 0.785
MDP0000250927 Malus domestica MDP0000250927 I 0.679
MDP0000703626 Malus domestica MDP0000703626 I 0.818
MDP0000871361 Malus domestica MDP0000871361 I 0.818
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.825
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.825
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.678
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.677
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.825
mgf017629m Mimulus guttatus mgf017629m I 0.697
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.686
OBART01G04210 Oryza barthii OBART01G04210 I 0.684
OBART03G05550 Oryza barthii OBART03G05550 I 0.821
OB01G13930 Oryza brachyantha OB01G13930 I 0.684
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.684
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.684
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.821
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.684
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.821
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.684
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.684
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.821
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.684
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.821
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.684
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.821
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.684
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.821
DREB2A Oryza sativa OS01G0165000 I 0.684
DREB2E Oryza sativa OS03G0174400 I 0.821
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.821
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.821
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.758
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I 0.748
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.692
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.805
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.681
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.825
Pm003634 Prunus mume Pm003634 I 0.688
Pm025865 Prunus mume Pm025865 I 0.818
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.818
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.688
27810.m000639 Ricinus communis 27810.m000639 I 0.825
30170.m014115 Ricinus communis 30170.m014115 I 0.678
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.825
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.800
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.695
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.695
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.774
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.705
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.705
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.774
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.679
Solyc10g080310.1 Solanum lycopersicum Solyc10g080310.1 I 0.772
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.825
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.679
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.680
TCM_024756 Theobroma cacao TCM_024756 I 0.815
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.811
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.825
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.802
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.821
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.821