gene18594-v1.0-hybrid (Fragaria vesca)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 gene18594-v1.0-hybrid T023222_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.703 0.703
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna18594.1-v1.0-hybrid B3 84 187

Links

Other B3 family TFs
Other Fragaria vesca TFs

251 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04153 Aegilops tauschii F775_04153 N 0.713
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.752
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.733
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.861
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.743
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.822
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.851
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.851
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.822
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.752
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.713
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.703
NGA3 Arabidopsis thaliana AT1G01030 N 0.822
ARF31 Arabidopsis thaliana AT2G36080 N 0.723
NGA1 Arabidopsis thaliana AT2G46870 N 0.851
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.713
NGA2 Arabidopsis thaliana AT3G61970 N 0.812
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.752
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.752
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.822
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.713
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.713
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.861
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.822
Bostr.7365s0004 Boechera stricta Bostr.7365s0004 I 0.714
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.782
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.822
Bo01079s020 Brassica oleracea Bo01079s020 N 0.713
Bo3g001110 Brassica oleracea Bo3g001110 N 0.802
Bo3g003800 Brassica oleracea Bo3g003800 N 0.723
Bo3g039420 Brassica oleracea Bo3g039420 N 0.851
Bo3g064320 Brassica oleracea Bo3g064320 N 0.703
Bo4g006900 Brassica oleracea Bo4g006900 N 0.842
Bo4g035110 Brassica oleracea Bo4g035110 N 0.703
Bo4g099000 Brassica oleracea Bo4g099000 N 0.802
Bo4g197410 Brassica oleracea Bo4g197410 I 0.851
Bo5g002790 Brassica oleracea Bo5g002790 N 0.812
Bo6g079210 Brassica oleracea Bo6g079210 N 0.832
Bo8g097490 Brassica oleracea Bo8g097490 N 0.842
Bo9g176470 Brassica oleracea Bo9g176470 N 0.723
Bra000434 Brassica rapa Bra000434 N 0.842
Bra001411 Brassica rapa Bra001411 N 0.703
Bra003482 Brassica rapa Bra003482 N 0.812
Bra004501 Brassica rapa Bra004501 N 0.842
Bra005301 Brassica rapa Bra005301 N 0.703
Bra005886 Brassica rapa Bra005886 N 0.723
Bra007646 Brassica rapa Bra007646 N 0.842
Bra014415 Brassica rapa Bra014415 N 0.812
Bra017262 Brassica rapa Bra017262 N 0.713
Bra030497 Brassica rapa Bra030497 N 0.812
Bra033294 Brassica rapa Bra033294 N 0.792
Bra040478 Brassica rapa Bra040478 I 0.871
PK04952.1 Cannabis sativa PK04952.1 I 0.713
PK11025.1 Cannabis sativa PK11025.1 I 0.881
PK21157.1 Cannabis sativa PK21157.1 I 0.822
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.851
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.822
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.713
Cagra.11546s0001 Capsella grandiflora Cagra.11546s0001 I 0.723
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.713
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.822
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.752
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.752
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.822
Carubv10010429m.g Capsella rubella Carubv10010429m.g I 0.723
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.713
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.812
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.851
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.713
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.713
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.871
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.871
Ca_01368 Cicer arietinum Ca_01368 I 0.842
Ca_25633 Cicer arietinum Ca_25633 I 0.733
Cla005055 Citrullus lanatus Cla005055 N 0.752
Cla006845 Citrullus lanatus Cla006845 I 0.822
Cla014858 Citrullus lanatus Cla014858 N 0.848
Cla017937 Citrullus lanatus Cla017937 I 0.703
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.733
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.861
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.871
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.861
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.871
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.733
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.859
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.782
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.792
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.832
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.871
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.842
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.832
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.822
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.743
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.713
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.703
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.891
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.723
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.723
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.842
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.861
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.723
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.861
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.842
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.871
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.703
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.871
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.840
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.851
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.812
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.832
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.703
MLOC_38822 Hordeum vulgare MLOC_38822 I 0.713
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.812
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.703
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.812
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.842
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.812
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.723
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.713
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.871
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.861
MDP0000138163 Malus domestica MDP0000138163 N 0.812
MDP0000288808 Malus domestica MDP0000288808 N 0.822
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.713
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.861
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.842
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.842
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.713
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.743
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.703
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.851
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.832
mgf019085m Mimulus guttatus mgf019085m N 0.723
mgf023686m Mimulus guttatus mgf023686m I 0.733
mgf023769m Mimulus guttatus mgf023769m N 0.832
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.752
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.812
GSMUA_Achr4G30170_001 Musa acuminata GSMUA_Achr4G30170_001 N 0.717
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.762
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.713
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.703
OBART02G28100 Oryza barthii OBART02G28100 N 0.802
OBART03G01650 Oryza barthii OBART03G01650 N 0.832
OBART04G22880 Oryza barthii OBART04G22880 I 0.822
OBART10G17010 Oryza barthii OBART10G17010 N 0.733
OB02G35380 Oryza brachyantha OB02G35380 I 0.822
OB03G11610 Oryza brachyantha OB03G11610 N 0.842
OB10G24100 Oryza brachyantha OB10G24100 N 0.744
OB12G13420 Oryza brachyantha OB12G13420 N 0.703
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.802
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.832
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.822
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.733
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.802
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.832
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.822
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.733
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.802
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.832
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.822
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.733
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.701
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.802
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.832
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.733
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.832
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.822
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.733
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.802
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.802
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.832
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.733
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.802
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.762
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.733
OS02G0683500 Oryza sativa OS02G0683500 N 0.802
OS03G0120900 Oryza sativa OS03G0120900 N 0.832
OS04G0581400 Oryza sativa OS04G0581400 I 0.822
OS10G0537100 Oryza sativa OS10G0537100 N 0.733
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.772
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.723
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.802
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.832
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.832
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.703
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.789
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.703
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.802
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.842
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.842
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.861
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.842
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.713
Pm024248 Prunus mume Pm024248 I 0.871
Pm028725 Prunus mume Pm028725 N 0.851
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.851
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.871
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.717
30032.m000462 Ricinus communis 30032.m000462 N 0.723
30068.m002615 Ricinus communis 30068.m002615 I 0.832
30076.m004471 Ricinus communis 30076.m004471 I 0.871
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.851
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.842
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.851
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.723
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.723
Si011823m.g Setaria italica Si011823m.g N 0.802
Si020241m.g Setaria italica Si020241m.g N 0.733
Si036864m.g Setaria italica Si036864m.g N 0.842
Si039972m.g Setaria italica Si039972m.g N 0.703
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.822
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.812
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.851
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.743
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.822
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.822
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.743
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.871
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.714
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.842
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.772
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.802
TCM_005014 Theobroma cacao TCM_005014 I 0.861
TCM_015590 Theobroma cacao TCM_015590 I 0.881
TCM_022729 Theobroma cacao TCM_022729 N 0.747
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.703
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I 0.713
Traes_1BL_B8B4C1FB6 Triticum aestivum Traes_1BL_B8B4C1FB6 I 0.703
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.713
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.854
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.802
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.929
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.792
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.812
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.762
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.812
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.812
TRIUR3_01515 Triticum urartu TRIUR3_01515 N 0.723
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.703
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.743
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.733
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.891
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.723
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.851
AC216872.3_FG002 Zea mays AC216872.3_FG002 N 0.700
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.802
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.772
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.782
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.822
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.792
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.717