cassava19892.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava19892.m1 T137832_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.797 0.891
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.797 0.870
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.796 0.848
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.769 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava19892.m1 C2H2 ZF 227 249
cassava19892.m1 C2H2 ZF 280 302

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.769
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.797
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.797
ZAT1 Arabidopsis thaliana AT1G02030 D 0.796
ZAT4 Arabidopsis thaliana AT2G45120 D 0.797
AZF2 Arabidopsis thaliana AT3G19580 D 0.769
ZAT9 Arabidopsis thaliana AT3G60580 D 0.797
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.797
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.769
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.797
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.796
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.769
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.760
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.786
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.769
Bo1g113530 Brassica oleracea Bo1g113530 I 0.769
Bo3g037560 Brassica oleracea Bo3g037560 I 0.773
Bo4g104940 Brassica oleracea Bo4g104940 I 0.797
Bo4g195370 Brassica oleracea Bo4g195370 I 0.773
Bo5g113850 Brassica oleracea Bo5g113850 I 0.769
Bo6g077190 Brassica oleracea Bo6g077190 I 0.797
Bo8g095300 Brassica oleracea Bo8g095300 I 0.797
Bra000372 Brassica rapa Bra000372 I 0.773
Bra003422 Brassica rapa Bra003422 I 0.797
Bra007545 Brassica rapa Bra007545 I 0.797
Bra014483 Brassica rapa Bra014483 I 0.797
Bra022436 Brassica rapa Bra022436 I 0.769
Bra038219 Brassica rapa Bra038219 I 0.769
Bra040325 Brassica rapa Bra040325 I 0.773
PK10188.1 Cannabis sativa PK10188.1 I 0.769
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.792
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.797
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.769
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.769
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.797
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.792
evm.TU.supercontig_111.55 Carica papaya evm.TU.supercontig_111.55 N 0.757
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.797
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.793
Ca_01586 Cicer arietinum Ca_01586 I 0.769
Ca_05641 Cicer arietinum Ca_05641 I 0.793
Ca_18364 Cicer arietinum Ca_18364 I 0.769
Ca_23672 Cicer arietinum Ca_23672 I 0.788
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.769
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.788
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.769
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.769
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.769
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.788
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.820
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.793
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.769
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.807
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.773
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.797
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.783
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.769
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.769
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.782
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.788
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.788
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.769
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.769
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.793
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.769
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.769
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.797
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.769
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.796
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.769
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.820
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.769
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.769
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.793
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.769
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.783
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.798
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.782
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.765
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.769
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.769
MDP0000198015 Malus domestica MDP0000198015 I 0.769
MDP0000319225 Malus domestica MDP0000319225 I 0.769
MDP0000573176 Malus domestica MDP0000573176 I 0.769
MDP0000762756 Malus domestica MDP0000762756 I 0.769
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.770
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.818
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.769
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.769
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.788
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.770
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.769
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.769
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.782
mgf006006m Mimulus guttatus mgf006006m I 0.770
mgf017082m Mimulus guttatus mgf017082m I 0.805
mgf021094m Mimulus guttatus mgf021094m I 0.811
mgf021789m Mimulus guttatus mgf021789m I 0.760
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.792
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.786
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.768
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.786
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.759
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.776
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.774
OBART02G26700 Oryza barthii OBART02G26700 I 0.782
OBART03G22570 Oryza barthii OBART03G22570 I 0.760
OBART04G21020 Oryza barthii OBART04G21020 I 0.792
OB03G31780 Oryza brachyantha OB03G31780 I 0.760
OB04G28040 Oryza brachyantha OB04G28040 I 0.786
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.782
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.760
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.792
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.782
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.760
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.782
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.760
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.792
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.786
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.760
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.782
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.792
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.782
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.792
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.792
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.793
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.782
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.760
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.792
OS02G0659500 Oryza sativa OS02G0659500 I 0.782
OS03G0437200 Oryza sativa OS03G0437200 I 0.760
OS04G0552700 Oryza sativa OS04G0552700 I 0.792
OS12G0583700 Oryza sativa OS12G0583700 I 0.793
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.786
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I 0.770
Pavir.J15191 Panicum virgatum Pavir.J15191 I 0.770
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.770
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.803
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.769
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.769
Pm005390 Prunus mume Pm005390 I 0.769
Pm021284 Prunus mume Pm021284 I 0.769
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.769
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.769
28152.m000908 Ricinus communis 28152.m000908 I 0.769
29661.m000908 Ricinus communis 29661.m000908 I 0.770
30170.m013751 Ricinus communis 30170.m013751 I 0.770
30174.m008818 Ricinus communis 30174.m008818 I 0.827
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.769
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.769
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.802
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.797
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.769
Si010615m.g Setaria italica Si010615m.g I 0.792
Si023013m.g Setaria italica Si023013m.g I 0.769
Si032711m.g Setaria italica Si032711m.g I 0.770
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.797
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.769
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.791
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.770
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.769
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.769
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.786
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.791
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.797
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.759
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.769
Sb02g038070 Sorghum bicolor Sb02g038070 I 0.770
TCM_007214 Theobroma cacao TCM_007214 I 0.769
TCM_014903 Theobroma cacao TCM_014903 I 0.756
TCM_034720 Theobroma cacao TCM_034720 I 0.769
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.793
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.776
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.770
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.770
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.797
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.769
AC185108.3_FG011 Zea mays AC185108.3_FG011 I 0.770
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.792