IRF6 (Anolis carolinensis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSACAG00000005931 T243911_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.962 0.962
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.952 0.952
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.943 0.943
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.943 0.943
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.943 0.943
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.943 0.943
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.943 0.943
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.933 0.933
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.781 0.781
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.705 0.705
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.705 0.705
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.705 0.705
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.705 0.705
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.705 0.705
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.705 0.705
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.705 0.705
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSACAP00000005847 IRF 9 114

Links

Other IRF family TFs
Other Anolis carolinensis TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OCP3 Arabidopsis lyrata fgenesh2_kg.6__1093__AT5G11270.1 N
OCP3 Arabidopsis thaliana AT5G11270 N
Bostr.23997s0022 Boechera stricta Bostr.23997s0022 N
BRADI1G36770 Brachypodium distachyon BRADI1G36770 N
BRADI1G58817 Brachypodium distachyon BRADI1G58817 N
Bo9g171420 Brassica oleracea Bo9g171420 N
Bra008975 Brassica rapa Bra008975 N
PK00680.1 Cannabis sativa PK00680.1 N
Cagra.7526s0026 Capsella grandiflora Cagra.7526s0026 N
Carubv10002492m.g Capsella rubella Carubv10002492m.g N
evm.TU.supercontig_115.10 Carica papaya evm.TU.supercontig_115.10 N
Cla021272 Citrullus lanatus Cla021272 N
Ciclev10010768m.g Citrus clementina Ciclev10010768m.g N
orange1.1g040593m.g Citrus sinensis orange1.1g040593m.g N
Cucsa.310460 Cucumis sativus Cucsa.310460 N
Thhalv10013990m.g Eutrema salsugineum Thhalv10013990m.g N
gene11668-v1.0-hybrid Fragaria vesca gene11668-v1.0-hybrid N
Gorai.004G274200 Gossypium raimondii Gorai.004G274200 N
MLOC_45474 Hordeum vulgare MLOC_45474 N
LPERR06G16850 Leersia perrieri LPERR06G16850 N
chr1.CM0442.170.nd Lotus japonicus chr1.CM0442.170.nd N
MDP0000202143 Malus domestica MDP0000202143 N
MDP0000119866 Malus domestica MDP0000119866 N
cassava18449.valid.m1 Manihot esculenta cassava18449.valid.m1 N
mgf000632m Mimulus guttatus mgf000632m N
OBART06G20210 Oryza barthii OBART06G20210 N
OB06G27850 Oryza brachyantha OB06G27850 N
BGIOSGA023211 Oryza indica BGIOSGA023211 N
OLONG_013537 Oryza longistaminata OLONG_013537 N
OMERI06G20820 Oryza meridionalis OMERI06G20820 N
ONIVA06G23990 Oryza nivara ONIVA06G23990 N
OPUNC06G18430 Oryza punctata OPUNC06G18430 N
ORUFI06G21620 Oryza rufipogon ORUFI06G21620 N
OS06G0601000 Oryza sativa OS06G0601000 N
Pavir.Db01233 Panicum virgatum Pavir.Db01233 N
Pavir.Da00552 Panicum virgatum Pavir.Da00552 N
Pm004594 Prunus mume Pm004594 N
PRUPE_ppa007560mg Prunus persica PRUPE_ppa007560mg N
29848.m004652 Ricinus communis 29848.m004652 N
Si006856m.g Setaria italica Si006856m.g N
Solyc08g061140.2 Solanum lycopersicum Solyc08g061140.2 N
PGSC0003DMG400020785 Solanum tuberosum PGSC0003DMG400020785 N
Sb10g023400 Sorghum bicolor Sb10g023400 N
TCM_038389 Theobroma cacao TCM_038389 N
Traes_7AL_0FFE02C4C Triticum aestivum Traes_7AL_0FFE02C4C N
Traes_7BL_E2E7AA383 Triticum aestivum Traes_7BL_E2E7AA383 N
Traes_7DL_613F5240E Triticum aestivum Traes_7DL_613F5240E N
OCP3 Vitis vinifera VIT_04s0008g05190 N
GRMZM2G163641 Zea mays GRMZM2G163641 N