CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10017646m.g
(
Capsella rubella
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
Carubv10017646m.g
T250630_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G58630
M06976_2.00
Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND
Dap-seq
OMalley et al.(2016)
AT3G58630_col_a
0.934
0.901
AT3G58630
M06977_2.00
Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN
Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a
0.934
0.901
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10017646m
MADF
38
127
AWGNRFVELSRGNLRQKHWQEVANAVNDRHFNSGRNVSAAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSESNPGSYISPWPFFSALDDL
Links
Other
MADF
family TFs
Other
Capsella rubella
TFs
73 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_021_00219
Aquilegia coerulea
Aquca_021_00219
I
0.846
fgenesh2_kg.5__2307__AT3G58630.1
Arabidopsis lyrata
fgenesh2_kg.5__2307__AT3G58630.1
I
0.933
AT3G58630
Arabidopsis thaliana
AT3G58630
D
0.934
Bostr.20903s0103
Boechera stricta
Bostr.20903s0103
I
0.934
BRADI2G16780
Brachypodium distachyon
BRADI2G16780
I
0.842
Bo6g075950
Brassica oleracea
Bo6g075950
I
0.925
Bra003346
Brassica rapa
Bra003346
I
0.925
Bra007407
Brassica rapa
Bra007407
I
0.899
PK27986.1
Cannabis sativa
PK27986.1
I
0.902
Cagra.0686s0075
Capsella grandiflora
Cagra.0686s0075
I
0.971
evm.TU.supercontig_209.41
Carica papaya
evm.TU.supercontig_209.41
I
0.888
evm.TU.supercontig_7.72
Carica papaya
evm.TU.supercontig_7.72
I
0.894
Ca_19877
Cicer arietinum
Ca_19877
I
0.883
Ca_00394
Cicer arietinum
Ca_00394
I
0.876
Cla019967
Citrullus lanatus
Cla019967
I
0.831
Cla009854
Citrullus lanatus
Cla009854
I
0.877
Cla002288
Citrullus lanatus
Cla002288
I
0.829
Ciclev10016016m.g
Citrus clementina
Ciclev10016016m.g
I
0.875
orange1.1g021525m.g
Citrus sinensis
orange1.1g021525m.g
I
0.875
Cucsa.213110
Cucumis sativus
Cucsa.213110
I
0.831
Cucsa.213120
Cucumis sativus
Cucsa.213120
I
0.831
Thhalv10006105m.g
Eutrema salsugineum
Thhalv10006105m.g
I
0.926
gene29666-v1.0-hybrid
Fragaria vesca
gene29666-v1.0-hybrid
I
0.918
GLYMA15G08890
Glycine max
GLYMA15G08890
I
0.876
GLYMA13G30280
Glycine max
GLYMA13G30280
I
0.876
GLYMA12G33850
Glycine max
GLYMA12G33850
I
0.843
GLYMA13G36650
Glycine max
GLYMA13G36650
I
0.843
Gorai.011G039600
Gossypium raimondii
Gorai.011G039600
I
0.875
Lus10025404.g
Linum usitatissimum
Lus10025404.g
I
0.841
Lus10015282.g
Linum usitatissimum
Lus10015282.g
I
0.841
LjSGA_058481.1
Lotus japonicus
LjSGA_058481.1
I
0.877
MDP0000301451
Malus domestica
MDP0000301451
I
0.917
cassava2218.valid.m1
Manihot esculenta
cassava2218.valid.m1
I
0.869
cassava21220.m1
Manihot esculenta
cassava21220.m1
I
0.869
MTR_4g079960
Medicago truncatula
MTR_4g079960
I
0.867
MTR_2g016140
Medicago truncatula
MTR_2g016140
I
0.901
mgf006505m
Mimulus guttatus
mgf006505m
I
0.833
mgf001239m
Mimulus guttatus
mgf001239m
N
0.835
mgf000047m
Mimulus guttatus
mgf000047m
I
0.826
GSMUA_Achr9G06410_001
Musa acuminata
GSMUA_Achr9G06410_001
I
0.868
GSMUA_Achr6G26840_001
Musa acuminata
GSMUA_Achr6G26840_001
I
0.920
GSMUA_Achr5G09160_001
Musa acuminata
GSMUA_Achr5G09160_001
I
0.887
GSMUA_Achr1G27460_001
Musa acuminata
GSMUA_Achr1G27460_001
I
0.895
GSMUA_Achr1G11500_001
Musa acuminata
GSMUA_Achr1G11500_001
I
0.882
OBART05G25610
Oryza barthii
OBART05G25610
I
0.844
ORGLA05G0221200
Oryza glaberrima
ORGLA05G0221200
I
0.844
OGLUM05G27260
Oryza glumaepatula
OGLUM05G27260
I
0.844
BGIOSGA020349
Oryza indica
BGIOSGA020349
I
0.844
BGIOSGA020351
Oryza indica
BGIOSGA020351
I
0.844
OMERI02G35600
Oryza meridionalis
OMERI02G35600
I
0.844
ONIVA05G26860
Oryza nivara
ONIVA05G26860
I
0.844
OPUNC05G23220
Oryza punctata
OPUNC05G23220
I
0.829
ORUFI05G27490
Oryza rufipogon
ORUFI05G27490
I
0.844
OS05G0560600
Oryza sativa
OS05G0560600
I
0.844
Pavir.J11649
Panicum virgatum
Pavir.J11649
I
0.829
Pavir.J33948
Panicum virgatum
Pavir.J33948
I
0.829
POPTR_0003s11850
Populus trichocarpa
POPTR_0003s11850
I
0.815
POPTR_0001s08350
Populus trichocarpa
POPTR_0001s08350
I
0.869
PRUPE_ppa009171mg
Prunus persica
PRUPE_ppa009171mg
I
0.871
PRUPE_ppa008833mg
Prunus persica
PRUPE_ppa008833mg
I
0.886
29900.m001628
Ricinus communis
29900.m001628
I
0.869
SapurV1A.0045s0480
Salix purpurea
SapurV1A.0045s0480
I
0.863
SapurV1A.0260s0280
Salix purpurea
SapurV1A.0260s0280
I
0.874
Si022565m.g
Setaria italica
Si022565m.g
I
0.829
Solyc02g076810.2
Solanum lycopersicum
Solyc02g076810.2
I
0.834
Solyc12g010890.1
Solanum lycopersicum
Solyc12g010890.1
I
0.906
PGSC0003DMG400010197
Solanum tuberosum
PGSC0003DMG400010197
I
0.834
PGSC0003DMG400007806
Solanum tuberosum
PGSC0003DMG400007806
I
0.914
Sb09g028350
Sorghum bicolor
Sb09g028350
I
0.829
TCM_029695
Theobroma cacao
TCM_029695
I
0.875
VIT_10s0003g01300
Vitis vinifera
VIT_10s0003g01300
I
0.864
VIT_12s0028g02150
Vitis vinifera
VIT_12s0028g02150
I
0.905
GRMZM2G157219
Zea mays
GRMZM2G157219
I
0.829