OB12G16480 (Oryza brachyantha)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 OB12G16480 T275408_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.771 0.856
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.750 0.806
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.750 0.806
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.726 0.849
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.712 0.791
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.675 0.777
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.667 0.770
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB12G16480.1 Myb 55 101
OB12G16480.1 Myb 107 153
OB12G16480.1 Myb 159 203

Links

Other Myb/SANT family TFs
Other Oryza brachyantha TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05724 Aegilops tauschii F775_05724 I 0.859
F775_10106 Aegilops tauschii F775_10106 I 0.682
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.698
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.714
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.776
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.682
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.687
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.675
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.712
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.750
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.687
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.750
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.675
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.712
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.712
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.663
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.693
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.750
BRADI2G07677 Brachypodium distachyon BRADI2G07677 N 0.715
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.794
Bo1g010040 Brassica oleracea Bo1g010040 I 0.746
Bo3g007070 Brassica oleracea Bo3g007070 I 0.718
Bo3g171130 Brassica oleracea Bo3g171130 I 0.745
Bo3g179620 Brassica oleracea Bo3g179620 I 0.718
Bo7g115810 Brassica oleracea Bo7g115810 I 0.748
Bo9g171130 Brassica oleracea Bo9g171130 I 0.712
Bo9g184660 Brassica oleracea Bo9g184660 I 0.664
Bra006102 Brassica rapa Bra006102 I 0.716
Bra008956 Brassica rapa Bra008956 I 0.712
Bra009597 Brassica rapa Bra009597 I 0.664
Bra011376 Brassica rapa Bra011376 I 0.746
Bra034531 Brassica rapa Bra034531 I 0.745
Bra037045 Brassica rapa Bra037045 I 0.718
PK12011.1 Cannabis sativa PK12011.1 D 0.726
PK22174.1 Cannabis sativa PK22174.1 I 0.733
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.673
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.694
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.695
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.695
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.673
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.694
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.787
Ca_01884 Cicer arietinum Ca_01884 I 0.725
Ca_14925 Cicer arietinum Ca_14925 I 0.763
Cla018173 Citrullus lanatus Cla018173 I 0.681
Cla022565 Citrullus lanatus Cla022565 I 0.772
Cla023357 Citrullus lanatus Cla023357 I 0.770
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.782
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.677
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.677
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.772
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.687
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.770
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.772
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.705
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.671
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.712
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.789
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.698
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.739
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.739
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.730
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.736
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.735
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.670
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.699
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.751
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.747
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.843
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.663
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.805
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.679
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.679
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.662
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.784
MDP0000179225 Malus domestica MDP0000179225 I 0.797
MDP0000219581 Malus domestica MDP0000219581 I 0.670
MDP0000295807 Malus domestica MDP0000295807 I 0.777
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.758
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.764
mgf006384m Mimulus guttatus mgf006384m I 0.685
mgf008601m Mimulus guttatus mgf008601m I 0.769
mgf019610m Mimulus guttatus mgf019610m I 0.664
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.779
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.811
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.771
Q948S6_TOBAC Nicotiana tabacum Q948S6_TOBAC D 0.667
OBART01G08110 Oryza barthii OBART01G08110 I 0.882
OBART05G19200 Oryza barthii OBART05G19200 I 0.703
OB01G18340 Oryza brachyantha OB01G18340 I 0.898
OB01G45570 Oryza brachyantha OB01G45570 I 0.665
OB05G26770 Oryza brachyantha OB05G26770 N 0.689
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.852
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.695
ORGLA05G0166300 Oryza glaberrima ORGLA05G0166300 I 0.681
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.909
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.882
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.695
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.703
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.882
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.840
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.882
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.703
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.886
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.886
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.689
OPUNC12G06560 Oryza punctata OPUNC12G06560 N 0.759
ORUFI01G08920 Oryza rufipogon ORUFI01G08920 N 0.669
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.703
MYB3R-2 Oryza sativa OS01G0841500 I 0.695
OS05G0459000 Oryza sativa OS05G0459000 I 0.681
OS12G0238000 Oryza sativa OS12G0238000 I 0.903
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.903
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.694
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.903
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.694
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.826
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.691
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.675
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.681
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.685
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.770
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.770
Pm002704 Prunus mume Pm002704 I 0.670
Pm005124 Prunus mume Pm005124 I 0.787
Pm018007 Prunus mume Pm018007 I 0.679
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.807
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.670
PRUPE_ppa022218mg Prunus persica PRUPE_ppa022218mg I 0.679
29794.m003447 Ricinus communis 29794.m003447 I 0.741
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.683
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.772
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.741
Si000842m.g Setaria italica Si000842m.g I 0.694
Si021484m.g Setaria italica Si021484m.g I 0.698
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.769
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.690
PGSC0003DMG400018588 Solanum tuberosum PGSC0003DMG400018588 I 0.671
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.668
Sb09g007370 Sorghum bicolor Sb09g007370 N 0.744
TCM_047091 Theobroma cacao TCM_047091 I 0.754
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.802
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.677
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.799
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.675
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.663
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.890
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.890
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.663
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.663
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.861
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.683
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.727
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.765