orange1.1g023196m.g (Citrus sinensis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 orange1.1g023196m.g T288844_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G11280
M01075_2.00 		Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN		 PBM
Sullivan et al.(2014)
pTH7245 		0.776 0.830
AT3G11280
M07074_2.00 		Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH		 Dap-seq
OMalley et al.(2016)
At3g11280_col_a 		0.776 0.830
AT3G11280
M07075_2.00 		Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN		 Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a 		0.776 0.830
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.692 0.787
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.692 0.787
AT5G05790
M07119_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWHH
DDWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g05790_col_a 		0.671 0.798
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.663 0.777
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g023196m Myb 124 171

Links

Other Myb/SANT family TFs
Other Citrus sinensis TFs

103 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I
ACOC_0000492601 Angiostrongylus costaricensis ACOC_0000492601 I
CBN23838 Caenorhabditis brenneri CBN23838 I
CBG20727 Caenorhabditis briggsae CBG20727 I
CBG09567 Caenorhabditis briggsae CBG09567 I
CBG22870 Caenorhabditis briggsae CBG22870 I
CBG20729 Caenorhabditis briggsae CBG20729 I
nhr-54 Caenorhabditis elegans WBGene00003644 I
nhr-170 Caenorhabditis elegans WBGene00008309 I
nhr-231 Caenorhabditis elegans WBGene00012449 I
nhr-232 Caenorhabditis elegans WBGene00012494 D
nhr-178 Caenorhabditis elegans WBGene00017510 I
CRE15675 Caenorhabditis remanei CRE15675 I
CRE30948 Caenorhabditis remanei CRE30948 I
CRE15644 Caenorhabditis remanei CRE15644 I
HCOI00483700 Haemonchus contortus HCOI00483700 I
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I
HPBE_0001646201 Heligmosomoides bakeri HPBE_0001646201 I
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I
NBR_0001834701 Nippostrongylus brasiliensis NBR_0001834701 I
NBR_0001834801 Nippostrongylus brasiliensis NBR_0001834801 I
scaffold31-EXSNAP2012.20 Pristionchus exspectatus scaffold31-EXSNAP2012.20 I
L596_g14536 Steinernema carpocapsae L596_g14536 I
L596_g14596 Steinernema carpocapsae L596_g14596 I
L596_g14590 Steinernema carpocapsae L596_g14590 I
L596_g14589 Steinernema carpocapsae L596_g14589 I
L596_g14588 Steinernema carpocapsae L596_g14588 I
L596_g14586 Steinernema carpocapsae L596_g14586 I
L596_g14580 Steinernema carpocapsae L596_g14580 N
L596_g14541 Steinernema carpocapsae L596_g14541 N
L596_g14537 Steinernema carpocapsae L596_g14537 I
L596_g14533 Steinernema carpocapsae L596_g14533 I
L596_g14532 Steinernema carpocapsae L596_g14532 I
L889_g8187 Steinernema feltiae L889_g8187 I
L889_g8185 Steinernema feltiae L889_g8185 I
L889_g6804 Steinernema feltiae L889_g6804 I
L889_g6803 Steinernema feltiae L889_g6803 N
L889_g6792 Steinernema feltiae L889_g6792 I
L889_g6692 Steinernema feltiae L889_g6692 I
L889_g6694 Steinernema feltiae L889_g6694 I
L889_g6695 Steinernema feltiae L889_g6695 I
L889_g6696 Steinernema feltiae L889_g6696 I
L889_g6806 Steinernema feltiae L889_g6806 N
L893_g27943 Steinernema glaseri L893_g27943 N
L893_g18993 Steinernema glaseri L893_g18993 I
L893_g18997 Steinernema glaseri L893_g18997 I
L893_g27930 Steinernema glaseri L893_g27930 I
L893_g27935 Steinernema glaseri L893_g27935 N
L898_g21763 Steinernema monticolum L898_g21763 I
L898_g12798 Steinernema monticolum L898_g12798 I
L898_g2943 Steinernema monticolum L898_g2943 N
L898_g3512 Steinernema monticolum L898_g3512 I
L898_g3514 Steinernema monticolum L898_g3514 I
L898_g3515 Steinernema monticolum L898_g3515 I
L898_g4012 Steinernema monticolum L898_g4012 I
L898_g4015 Steinernema monticolum L898_g4015 N
L898_g4018 Steinernema monticolum L898_g4018 N
L898_g19014 Steinernema monticolum L898_g19014 I
L898_g19012 Steinernema monticolum L898_g19012 I
L898_g12799 Steinernema monticolum L898_g12799 I
L892_g2782 Steinernema scapterisci L892_g2782 I
L892_g2781 Steinernema scapterisci L892_g2781 I
L892_g2780 Steinernema scapterisci L892_g2780 I
L892_g14834 Steinernema scapterisci L892_g14834 N
L892_g14818 Steinernema scapterisci L892_g14818 I
L892_g14817 Steinernema scapterisci L892_g14817 I
L892_g10843 Steinernema scapterisci L892_g10843 I
L892_g10842 Steinernema scapterisci L892_g10842 I
L892_g10840 Steinernema scapterisci L892_g10840 N
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I