Cmyd_10014217 (Chelonia mydas)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Cmyd_10014217 T318967_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.687 0.795
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.687 0.795
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.687 0.795
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.687 0.795
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.661 0.487
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.661 0.487
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.661 0.487
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.661 0.487
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.661 0.487
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.661 0.487
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.661 0.487
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.661 0.487
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.661 0.487
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.661 0.487
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.661 0.487
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.661 0.487
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.661 0.487
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.661 0.487
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.661 0.487
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10014217 RFX 57 95

Links

Other RFX family TFs
Other Chelonia mydas TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.656
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.687
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.687
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.659
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.660
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.687
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.686
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.653
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.658
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.687
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.658
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.681
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.683
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.661
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.687
RFX7 Bos taurus ENSBTAG00000000565 I 0.687
RFX5 Bos taurus ENSBTAG00000017580 I 0.661
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.658
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.687
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.661
Aan_R010941 Calypte anna Aan_R010941 I 0.654
Aan_R011989 Calypte anna Aan_R011989 I 0.687
RFX5 Canis familiaris ENSCAFG00000012661 I 0.661
RFX7 Canis familiaris ENSCAFG00000016029 I 0.687
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.687
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.661
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.660
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.661
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.687
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.687
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.657
csin102559 Clonorchis sinensis csin102559 I 0.664
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.655
rfx5 Danio rerio ENSDARG00000063258 I 0.660
rfx7 Danio rerio ENSDARG00000077237 I 0.684
RFX7 Danio rerio ENSDARG00000103691 I 0.681
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.687
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.661
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.652
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.652
RFX5 Echinops telfairi ENSETEG00000013503 I 0.661
RFX7 Echinops telfairi ENSETEG00000015037 I 0.672
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.656
RFX7 Equus caballus ENSECAG00000002379 I 0.687
RFX5 Equus caballus ENSECAG00000024774 I 0.661
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.687
D915_00887 Fasciola hepatica D915_00887 I 0.659
RFX5 Felis catus ENSFCAG00000005568 I 0.661
RFX7 Felis catus ENSFCAG00000029408 I 0.681
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.659
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.687
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.679
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.683
RFX5 Gallus gallus ENSGALG00000000836 I 0.657
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.683
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.667
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.659
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.687
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.661
RFX5 Homo sapiens ENSG00000143390 D 0.665
RFX7 Homo sapiens ENSG00000181827 D 0.687
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.652
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.663
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.659
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.659
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.656
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.661
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.687
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.657
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.683
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.651
LotgiG138119 Lottia gigantea LotgiG138119 I 0.651
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.687
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.661
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.687
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.661
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.661
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.687
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.693
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.661
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.656
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.687
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.687
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.658
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.687
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.661
Rfx5 Mus musculus ENSMUSG00000005774 I 0.661
Rfx7 Mus musculus ENSMUSG00000037674 D 0.687
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.656
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.685
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.656
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.685
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.656
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.687
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.661
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.687
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.659
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.687
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.656
T265_11740 Opisthorchis viverrini T265_11740 I 0.664
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.657
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.676
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.683
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.687
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.661
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.687
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.657
RFX7 Oryzias latipes ENSORLG00000005342 I 0.683
rfx7 Oryzias latipes ENSORLG00000008583 I 0.673
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.661
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.687
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.687
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.661
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.661
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.687
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.661
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.687
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.687
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.656
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.674
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.673
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.656
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.654
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.686
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.661
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.687
RFX7 Procavia capensis ENSPCAG00000004974 I 0.687
RFX5 Procavia capensis ENSPCAG00000011056 I 0.655
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.685
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.661
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.661
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.687
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.687
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.661
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.659
A_01977 Schistosoma haematobium A_01977 I 0.653
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.653
Smp_040350 Schistosoma mansoni Smp_040350 I 0.653
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.653
RFX5 Sorex araneus ENSSARG00000000750 I 0.661
RFX7 Sorex araneus ENSSARG00000010801 I 0.687
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.655
RFX5 Sus scrofa ENSSSCG00000006625 I 0.661
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.695
TsM_000553100 Taenia solium TsM_000553100 I 0.652
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.687
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.656
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.680
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.675
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.687
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.665
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.656
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.664
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.680
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.661
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.693
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.661
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.684
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.687
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.661
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.685
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.661
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.673
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.683
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.656