Lus10008444.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10008444.g T344888_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.880 0.644
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.879 0.610
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.879 0.610
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.879 0.610
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.879 0.610
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.873 0.610
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.871 0.831
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.870 0.593
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.866 0.847
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.866 0.627
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.856 0.763
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.856 0.763
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.853 0.780
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.853 0.780
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.853 0.780
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.853 0.780
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.853 0.780
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.853 0.780
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.848 0.610
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.848 0.610
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.842 0.661
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.842 0.627
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.839 0.627
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.839 0.627
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.836 0.695
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.833 0.627
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.833 0.627
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.833 0.627
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.832 0.661
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.824 0.593
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.823 0.593
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10008444 TCP 1 84

Links

Other TCP family TFs
Other Linum usitatissimum TFs

506 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI001201 Acyrthosiphon pisum ACYPI001201 N
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I
ACYPI34316 Acyrthosiphon pisum ACYPI34316 N
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I
HMG20A Anolis carolinensis ENSACAG00000011520 I
ACUA004787 Anopheles culicifacies ACUA004787 N
ADIR009189 Anopheles dirus ADIR009189 N
AEPI008671 Anopheles epiroticus AEPI008671 N
AFAF015452 Anopheles farauti AFAF015452 N
AFUN010952 Anopheles funestus AFUN010952 N
AMIN008132 Anopheles minimus AMIN008132 N
ASTEI08088 Anopheles stephensi ASTEI08088 N
GB41600 Apis mellifera GB41600 I
Afo_R007008 Aptenodytes forsteri Afo_R007008 I
Afo_R007636 Aptenodytes forsteri Afo_R007636 I
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I
ACEP22292 Atta cephalotes ACEP22292 N
BGIBMGA005325 Bombyx mori BGIBMGA005325 I
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I
HMG20A Bos taurus ENSBTAG00000020441 I
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I
Brh_R011859 Buceros rhinoceros Brh_R011859 I
HMG20B Callithrix jacchus ENSCJAG00000003488 I
HMG20A Callithrix jacchus ENSCJAG00000011131 I
Aan_R011684 Calypte anna Aan_R011684 I
Aan_R011791 Calypte anna Aan_R011791 I
Cflo_07151--XP_625193.1_APIME Camponotus floridanus Cflo_07151--XP_625193.1_APIME N
HMG20A Canis familiaris ENSCAFG00000018061 I
HMG20B Canis familiaris ENSCAFG00000019215 I
CapteG155070 Capitella teleta CapteG155070 I
CapteG191691 Capitella teleta CapteG191691 I
HMG20B Cavia porcellus ENSCPOG00000010777 I
HMG20A Cavia porcellus ENSCPOG00000011704 I
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I
CLEC002862 Cimex lectularius CLEC002862 I
CpipJ_CPIJ004396 Culex pipiens CpipJ_CPIJ004396 N
CPIJ004396 Culex quinquefasciatus CPIJ004396 N
KGM_20768 Danaus plexippus KGM_20768 N
hmg20a Danio rerio ENSDARG00000031198 I
hmg20b Danio rerio ENSDARG00000042045 I
DAPPUDRAFT_189566 Daphnia pulex DAPPUDRAFT_189566 N
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I
YQE_04289 Dendroctonus ponderosae YQE_04289 N
Hmg20a Dipodomys ordii ENSDORG00000000623 I
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I
HMG20A Echinops telfairi ENSETEG00000015812 I
HMG20A Erinaceus europaeus ENSEEUG00000004472 I
HMG20A Felis catus ENSFCAG00000022539 I
HMG20B Felis catus ENSFCAG00000026167 I
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I
HMG20B Gallus gallus ENSGALG00000027838 I
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I
Gfo_R004366 Geospiza fortis Gfo_R004366 I
Gfo_R007604 Geospiza fortis Gfo_R007604 I
HMG20A Gorilla gorilla ENSGGOG00000008439 I
HMG20B Gorilla gorilla ENSGGOG00000014805 I
HHAL010521-PA Halyomorpha halys HHAL010521-PA I
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I
HMEL017569 Heliconius melpomene HMEL017569 I
HelroG189739 Helobdella robusta HelroG189739 N
HMG20B Homo sapiens ENSG00000064961 I
HMG20A Homo sapiens ENSG00000140382 I
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I
LDEC005234 Leptinotarsa decemlineata LDEC005234 N
LotgiG196090 Lottia gigantea LotgiG196090 I
HMG20B Loxodonta africana ENSLAFG00000007845 I
HMG20A Loxodonta africana ENSLAFG00000018273 I
ENSP00000371133 Macaca fascicularis ENSP00000371133 I
HMG20A Macaca mulatta ENSMMUG00000007430 I
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I
HMG20B Meleagris gallopavo ENSMGAG00000001362 I
HMG20A Meleagris gallopavo ENSMGAG00000003179 I
MCINX003064 Melitaea cinxia MCINX003064 I
HMG20A Microcebus murinus ENSMICG00000011025 I
HMG20B Monodelphis domestica ENSMODG00000006884 I
HMG20A Monodelphis domestica ENSMODG00000012113 I
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I
Hmg20b Mus musculus ENSMUSG00000020232 D
Hmg20a Mus musculus ENSMUSG00000032329 I
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I
HMG20A Myotis lucifugus ENSMLUG00000011648 I
HMG20B Myotis lucifugus ENSMLUG00000022392 I
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I
hmg20a Oryzias latipes ENSORLG00000001794 I
hmg20b Oryzias latipes ENSORLG00000004640 I
HMG20A Otolemur garnettii ENSOGAG00000006630 I
HMG20B Otolemur garnettii ENSOGAG00000014171 I
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I
HMG20A Pan troglodytes ENSPTRG00000007326 I
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I
PHUM514030 Pediculus humanus PHUM514030 N
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I
Pvit_01997 Pogona vitticeps Pvit_01997 I
Pvit_08123 Pogona vitticeps Pvit_08123 I
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I
POPTR_0004s12290 Populus trichocarpa POPTR_0004s12290 I
HMG20B Procavia capensis ENSPCAG00000010772 I
HMG20A Procavia capensis ENSPCAG00000013879 I
Hmg20a Rattus norvegicus ENSRNOG00000016905 I
Hmg20b Rattus norvegicus ENSRNOG00000020601 I
RPRC008043 Rhodnius prolixus RPRC008043 I
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I
SINV20852 Solenopsis invicta SINV20852 N
HMG20A Sorex araneus ENSSARG00000012609 I
SMAR000790 Strigamia maritima SMAR000790 I
SMAR002604 Strigamia maritima SMAR002604 I
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I
HMG20A Sus scrofa ENSSSCG00000001871 I
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I
HMG20B Taeniopygia guttata ENSTGUG00000000169 I
HMG20A Taeniopygia guttata ENSTGUG00000003690 I
hmg20a Takifugu rubripes ENSTRUG00000016127 I
eef2l2 Takifugu rubripes ENSTRUG00000017921 I
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I
TC009230 Tribolium castaneum TC009230 N
TriadG23407 Trichoplax adhaerens TriadG23407 I
HMG20A Tupaia belangeri ENSTBEG00000015283 I
HMG20A Tursiops truncatus ENSTTRG00000006500 I
HMG20B Tursiops truncatus ENSTTRG00000008832 I
Tal_R006697 Tyto alba Tal_R006697 I
HMG20A Vicugna pacos ENSVPAG00000010013 I
hmg20b.S Xenopus laevis XB-GENE-17338323 I
hmg20b.L Xenopus laevis XB-GENE-5809135 I
hmg20a.L Xenopus laevis XB-GENE-955359 I
hmg20b Xenopus tropicalis XB-GENE-5809048 I
hmg20a Xenopus tropicalis XB-GENE-955353 I
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I
L798_15457 Zootermopsis nevadensis L798_15457 I