Thhalv10016870m.g (Eutrema salsugineum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Thhalv10016870m.g T345087_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.923 0.382
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.918 0.376
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.918 0.357
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.918 0.357
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.918 0.357
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.918 0.382
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.892 0.325
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.882 0.350
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.879 0.338
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.827 0.261
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.826 0.293
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.826 0.293
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.824 0.306
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10016870m TCP 28 318
Thhalv10016871m TCP 28 318

Links

Other TCP family TFs
Other Eutrema salsugineum TFs

380 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I
AT3G58630 Arabidopsis thaliana AT3G58630 D
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I
Bo6g075950 Brassica oleracea Bo6g075950 I
Bra003346 Brassica rapa Bra003346 I
Bra007407 Brassica rapa Bra007407 I
PK27986.1 Cannabis sativa PK27986.1 I
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I
Carubv10017646m.g Capsella rubella Carubv10017646m.g I
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I
Ca_00394 Cicer arietinum Ca_00394 I
Ca_19877 Cicer arietinum Ca_19877 I
Cla002288 Citrullus lanatus Cla002288 I
Cla009854 Citrullus lanatus Cla009854 I
Cla019967 Citrullus lanatus Cla019967 I
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I
Cucsa.213120 Cucumis sativus Cucsa.213120 I
Cucsa.213110 Cucumis sativus Cucsa.213110 I
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I
GLYMA12G33850 Glycine max GLYMA12G33850 I
GLYMA13G30280 Glycine max GLYMA13G30280 I
GLYMA13G36650 Glycine max GLYMA13G36650 I
GLYMA15G08890 Glycine max GLYMA15G08890 I
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I
Lus10025404.g Linum usitatissimum Lus10025404.g I
Lus10015282.g Linum usitatissimum Lus10015282.g I
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I
MDP0000301451 Malus domestica MDP0000301451 I
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I
cassava21220.m1 Manihot esculenta cassava21220.m1 I
MTR_2g016140 Medicago truncatula MTR_2g016140 I
MTR_4g079960 Medicago truncatula MTR_4g079960 I
mgf006505m Mimulus guttatus mgf006505m I
mgf000047m Mimulus guttatus mgf000047m I
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I
OBART05G25610 Oryza barthii OBART05G25610 I
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I
BGIOSGA020349 Oryza indica BGIOSGA020349 I
BGIOSGA020351 Oryza indica BGIOSGA020351 I
OMERI02G35600 Oryza meridionalis OMERI02G35600 I
ONIVA05G26860 Oryza nivara ONIVA05G26860 I
OPUNC05G23220 Oryza punctata OPUNC05G23220 I
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I
OS05G0560600 Oryza sativa OS05G0560600 I
Pavir.J11649 Panicum virgatum Pavir.J11649 I
Pavir.J33948 Panicum virgatum Pavir.J33948 I
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I
29900.m001628 Ricinus communis 29900.m001628 I
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I
Si022565m.g Setaria italica Si022565m.g I
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I
Sb09g028350 Sorghum bicolor Sb09g028350 I
TCM_029695 Theobroma cacao TCM_029695 I
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I
GRMZM2G157219 Zea mays GRMZM2G157219 I