CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.321760
(
Cucumis sativus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cucsa.321760
T137940_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RBE
M01858_2.00
Arabidopsis thaliana
NNNASWN
NWSTNNN
PBM
Weirauch et al.(2014)
pTH7538
0.769
0.870
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.321760.1
C2H2 ZF
38
60
YNCTFCGREFRSAQALGGHMNVH
Links
Other
C2H2 ZF
family TFs
Other
Cucumis sativus
TFs
180 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla008944
Citrullus lanatus
Cla008944
I
0.827
OB02G44430
Oryza brachyantha
OB02G44430
I
0.824
e_gw1.14.264.1
Physcomitrella patens
e_gw1.14.264.1
I
0.814
e_gw1.186.49.1
Physcomitrella patens
e_gw1.186.49.1
I
0.814
POPTR_0008s16390
Populus trichocarpa
POPTR_0008s16390
I
0.779
Lus10022206.g
Linum usitatissimum
Lus10022206.g
I
0.779
GRMZM2G000126
Zea mays
GRMZM2G000126
I
0.779
Pavir.Ab03315
Panicum virgatum
Pavir.Ab03315
I
0.776
Sb04g037590
Sorghum bicolor
Sb04g037590
I
0.776
Si019563m.g
Setaria italica
Si019563m.g
I
0.776
GRMZM2G344974
Zea mays
GRMZM2G344974
I
0.776
POPTR_0002s04260
Populus trichocarpa
POPTR_0002s04260
I
0.769
PGSC0003DMG400040225
Solanum tuberosum
PGSC0003DMG400040225
I
0.769
scaffold_403098.1
Arabidopsis lyrata
scaffold_403098.1
I
0.769
PRUPE_ppa015007mg
Prunus persica
PRUPE_ppa015007mg
I
0.769
Carubv10024766m.g
Capsella rubella
Carubv10024766m.g
I
0.769
Al_scaffold_0409_3
Arabidopsis lyrata
Al_scaffold_0409_3
I
0.769
Carubv10016073m.g
Capsella rubella
Carubv10016073m.g
I
0.769
POPTR_0010s08530
Populus trichocarpa
POPTR_0010s08530
I
0.769
OS11G0707300
Oryza sativa
OS11G0707300
I
0.769
OPUNC05G08760
Oryza punctata
OPUNC05G08760
I
0.769
evm.TU.supercontig_44.99
Carica papaya
evm.TU.supercontig_44.99
I
0.769
ONIVA11G23290
Oryza nivara
ONIVA11G23290
I
0.769
gene08240-v1.0-hybrid
Fragaria vesca
gene08240-v1.0-hybrid
I
0.769
OMERI07G13080
Oryza meridionalis
OMERI07G13080
I
0.769
Gorai.005G047800
Gossypium raimondii
Gorai.005G047800
I
0.769
OPUNC11G05640
Oryza punctata
OPUNC11G05640
I
0.769
ORGLA05G0088100
Oryza glaberrima
ORGLA05G0088100
I
0.769
OS05G0286100
Oryza sativa
OS05G0286100
I
0.769
Carubv10006881m.g
Capsella rubella
Carubv10006881m.g
I
0.769
ORUFI11G25670
Oryza rufipogon
ORUFI11G25670
I
0.769
Ciclev10006961m.g
Citrus clementina
Ciclev10006961m.g
I
0.769
ORUFI05G10920
Oryza rufipogon
ORUFI05G10920
I
0.769
PGSC0003DMG400017271
Solanum tuberosum
PGSC0003DMG400017271
I
0.769
Si019050m.g
Setaria italica
Si019050m.g
I
0.769
cassava14614.m1
Manihot esculenta
cassava14614.m1
I
0.769
cassava22028.m1
Manihot esculenta
cassava22028.m1
I
0.769
29603.m000536
Ricinus communis
29603.m000536
I
0.769
Pm009420
Prunus mume
Pm009420
I
0.769
Cla021878
Citrullus lanatus
Cla021878
I
0.769
Cagra.2117s0055
Capsella grandiflora
Cagra.2117s0055
I
0.769
cassava3359.m1
Manihot esculenta
cassava3359.m1
I
0.769
cassava40050.m1
Manihot esculenta
cassava40050.m1
I
0.769
Bostr.25993s0539
Boechera stricta
Bostr.25993s0539
I
0.769
Bostr.30275s0246
Boechera stricta
Bostr.30275s0246
I
0.769
Bostr.19424s0332
Boechera stricta
Bostr.19424s0332
I
0.769
Bostr.13129s0367
Boechera stricta
Bostr.13129s0367
I
0.769
Cucsa.255130
Cucumis sativus
Cucsa.255130
I
0.769
Cagra.2636s0028
Capsella grandiflora
Cagra.2636s0028
I
0.769
Cagra.3356s0074
Capsella grandiflora
Cagra.3356s0074
I
0.769
Solyc09g089590.1
Solanum lycopersicum
Solyc09g089590.1
I
0.769
Cagra.3462s0001
Capsella grandiflora
Cagra.3462s0001
I
0.769
Solyc06g053720.1
Solanum lycopersicum
Solyc06g053720.1
I
0.769
Si024070m.g
Setaria italica
Si024070m.g
I
0.769
Gorai.006G247700
Gossypium raimondii
Gorai.006G247700
I
0.769
TCM_021875
Theobroma cacao
TCM_021875
I
0.769
Traes_1AL_80D0BD0DC
Triticum aestivum
Traes_1AL_80D0BD0DC
I
0.769
VIT_05s0049g00070
Vitis vinifera
VIT_05s0049g00070
I
0.769
VIT_05s0049g00080
Vitis vinifera
VIT_05s0049g00080
I
0.769
TRIUR3_04794
Triticum urartu
TRIUR3_04794
I
0.769
TRIUR3_03721
Triticum urartu
TRIUR3_03721
I
0.769
Traes_1BL_4026DC5011
Triticum aestivum
Traes_1BL_4026DC5011
I
0.769
Carubv10002935m.g
Capsella rubella
Carubv10002935m.g
I
0.769
ONIVA06G26970
Oryza nivara
ONIVA06G26970
I
0.769
Bra023759
Brassica rapa
Bra023759
I
0.769
Thhalv10015420m.g
Eutrema salsugineum
Thhalv10015420m.g
I
0.769
Bra013257
Brassica rapa
Bra013257
I
0.769
Bra009160
Brassica rapa
Bra009160
I
0.769
Bo9g176590
Brassica oleracea
Bo9g176590
I
0.769
Bra005874
Brassica rapa
Bra005874
I
0.769
SapurV1A.0378s0150
Salix purpurea
SapurV1A.0378s0150
I
0.769
SapurV1A.0292s0200
Salix purpurea
SapurV1A.0292s0200
I
0.769
OLONG_023754
Oryza longistaminata
OLONG_023754
I
0.769
SapurV1A.0006s1030
Salix purpurea
SapurV1A.0006s1030
I
0.769
SapurV1A.0007s0790
Salix purpurea
SapurV1A.0007s0790
I
0.769
RBE
Arabidopsis lyrata
fgenesh2_kg.6__542__AT5G06070.1
I
0.769
SUP
Arabidopsis lyrata
fgenesh2_kg.3__2524__AT3G23130.1
I
0.769
Thhalv10017870m.g
Eutrema salsugineum
Thhalv10017870m.g
I
0.769
Thhalv10021992m.g
Eutrema salsugineum
Thhalv10021992m.g
I
0.769
SUP
Arabidopsis thaliana
AT3G23130
I
0.769
AT4G17810
Arabidopsis thaliana
AT4G17810
I
0.769
ZFP11
Arabidopsis thaliana
AT2G42410
I
0.769
PDK_20s1313421g001
Phoenix dactylifera
PDK_20s1313421g001
I
0.769
PDK_20s1360411g001
Phoenix dactylifera
PDK_20s1360411g001
I
0.769
RBE
Arabidopsis thaliana
AT5G06070
D
0.769
LjSGA_038753.2
Lotus japonicus
LjSGA_038753.2
I
0.769
Bo1g102390
Brassica oleracea
Bo1g102390
I
0.769
Bo3g003640
Brassica oleracea
Bo3g003640
I
0.769
Bo1g017920
Brassica oleracea
Bo1g017920
I
0.769
BGIOSGA033510
Oryza indica
BGIOSGA033510
I
0.769
BGIOSGA018378
Oryza indica
BGIOSGA018378
I
0.769
GSMUA_Achr7G26850_001
Musa acuminata
GSMUA_Achr7G26850_001
I
0.769
GLYMA11G34285
Glycine max
GLYMA11G34285
I
0.769
OBART05G10090
Oryza barthii
OBART05G10090
I
0.769
MDP0000225209
Malus domestica
MDP0000225209
I
0.769
OB02G10110
Oryza brachyantha
OB02G10110
I
0.769
OBART11G23770
Oryza barthii
OBART11G23770
I
0.769
OLONG_005038
Oryza longistaminata
OLONG_005038
I
0.769
Gorai.012G106300
Gossypium raimondii
Gorai.012G106300
I
0.769
OGLUM05G10360
Oryza glumaepatula
OGLUM05G10360
I
0.769
OGLUM11G22950
Oryza glumaepatula
OGLUM11G22950
I
0.769
orange1.1g041626m.g
Citrus sinensis
orange1.1g041626m.g
I
0.769
OB05G18710
Oryza brachyantha
OB05G18710
I
0.769
LPERR05G08090
Leersia perrieri
LPERR05G08090
I
0.769
Pavir.Aa03593
Panicum virgatum
Pavir.Aa03593
I
0.769
MTR_1g070265
Medicago truncatula
MTR_1g070265
I
0.769
MLOC_76482
Hordeum vulgare
MLOC_76482
I
0.769
Pavir.Ab00024
Panicum virgatum
Pavir.Ab00024
I
0.769
Gorai.008G226800
Gossypium raimondii
Gorai.008G226800
I
0.769
GLYMA12G35930
Glycine max
GLYMA12G35930
I
0.767
Lus10000705.g
Linum usitatissimum
Lus10000705.g
I
0.767
GLYMA13G34450
Glycine max
GLYMA13G34450
I
0.767
Lus10024875.g
Linum usitatissimum
Lus10024875.g
I
0.767
mg013419m
Mimulus guttatus
mg013419m
I
0.767
Cucsa.313240
Cucumis sativus
Cucsa.313240
I
0.767
Ca_12901
Cicer arietinum
Ca_12901
I
0.767
Cla016442
Citrullus lanatus
Cla016442
I
0.767
BRADI3G55760
Brachypodium distachyon
BRADI3G55760
I
0.766
e_gw1.6.268.1
Physcomitrella patens
e_gw1.6.268.1
I
0.766
e_gw1.1.457.1
Physcomitrella patens
e_gw1.1.457.1
I
0.766
F775_00917
Aegilops tauschii
F775_00917
I
0.766
Gorai.011G172000
Gossypium raimondii
Gorai.011G172000
N
0.757
Bostr.3148s0115
Boechera stricta
Bostr.3148s0115
N
0.757
gene30215-v1.0-hybrid
Fragaria vesca
gene30215-v1.0-hybrid
N
0.757
Ciclev10006751m.g
Citrus clementina
Ciclev10006751m.g
N
0.757
Carubv10028256m.g
Capsella rubella
Carubv10028256m.g
N
0.757
orange1.1g037433m.g
Citrus sinensis
orange1.1g037433m.g
N
0.757
Pavir.J31403
Panicum virgatum
Pavir.J31403
I
0.757
MDP0000143134
Malus domestica
MDP0000143134
N
0.757
Pavir.Gb02516
Panicum virgatum
Pavir.Gb02516
I
0.757
evm.TU.supercontig_44.98
Carica papaya
evm.TU.supercontig_44.98
N
0.757
Eucgr.H00184
Eucalyptus grandis
Eucgr.H00184
N
0.757
Cagra.19122s0001
Capsella grandiflora
Cagra.19122s0001
N
0.757
chr1.CM0147.870.nc
Lotus japonicus
chr1.CM0147.870.nc
I
0.757
PRUPE_ppa016491mg
Prunus persica
PRUPE_ppa016491mg
N
0.757
LPERR04G01660
Leersia perrieri
LPERR04G01660
I
0.757
GSMUA_Achr8G14360_001
Musa acuminata
GSMUA_Achr8G14360_001
N
0.757
GSMUA_Achr11G02150_001
Musa acuminata
GSMUA_Achr11G02150_001
N
0.757
GRMZM2G137736
Zea mays
GRMZM2G137736
I
0.757
LPERR07G09750
Leersia perrieri
LPERR07G09750
N
0.757
MTR_1g075430
Medicago truncatula
MTR_1g075430
N
0.757
OBART04G02370
Oryza barthii
OBART04G02370
I
0.757
OB07G18110
Oryza brachyantha
OB07G18110
N
0.757
OB04G12040
Oryza brachyantha
OB04G12040
I
0.757
MTR_7g063220
Medicago truncatula
MTR_7g063220
I
0.757
GLYMA20G34840
Glycine max
GLYMA20G34840
N
0.757
GLYMA10G32810
Glycine max
GLYMA10G32810
N
0.757
BGIOSGA025569
Oryza indica
BGIOSGA025569
N
0.757
BGIOSGA015610
Oryza indica
BGIOSGA015610
I
0.757
AMTR_s00012p00258620
Amborella trichopoda
AMTR_s00012p00258620
N
0.757
AMTR_s00009p00194700
Amborella trichopoda
AMTR_s00009p00194700
N
0.757
Bo7g065530
Brassica oleracea
Bo7g065530
N
0.757
Bo9g059250
Brassica oleracea
Bo9g059250
N
0.757
F775_21953
Aegilops tauschii
F775_21953
I
0.757
Bra033683
Brassica rapa
Bra033683
N
0.757
Bra027500
Brassica rapa
Bra027500
N
0.757
OBART07G11660
Oryza barthii
OBART07G11660
N
0.757
OGLUM04G02100
Oryza glumaepatula
OGLUM04G02100
I
0.757
Sb06g001730
Sorghum bicolor
Sb06g001730
I
0.757
PRUPE_ppa021945mg
Prunus persica
PRUPE_ppa021945mg
N
0.757
OS07G0417400
Oryza sativa
OS07G0417400
N
0.757
OS04G0168100
Oryza sativa
OS04G0168100
I
0.757
scaffold_800693.1
Arabidopsis lyrata
scaffold_800693.1
N
0.757
Si011797m.g
Setaria italica
Si011797m.g
I
0.757
Pm002649
Prunus mume
Pm002649
N
0.757
Cla021877
Citrullus lanatus
Cla021877
N
0.757
VIT_06s0004g05260
Vitis vinifera
VIT_06s0004g05260
N
0.757
TCM_020819
Theobroma cacao
TCM_020819
N
0.757
ORUFI07G11810
Oryza rufipogon
ORUFI07G11810
N
0.757
ORUFI04G03150
Oryza rufipogon
ORUFI04G03150
I
0.757
OMERI04G02610
Oryza meridionalis
OMERI04G02610
I
0.757
OLONG_022667
Oryza longistaminata
OLONG_022667
I
0.757
OLONG_012182
Oryza longistaminata
OLONG_012182
N
0.757
OGLUM07G11160
Oryza glumaepatula
OGLUM07G11160
N
0.757
ONIVA04G01910
Oryza nivara
ONIVA04G01910
I
0.757
ONIVA07G09630
Oryza nivara
ONIVA07G09630
N
0.757
ORGLA07G0099100
Oryza glaberrima
ORGLA07G0099100
N
0.757
OPUNC07G10480
Oryza punctata
OPUNC07G10480
N
0.757
ONIVA07G09640
Oryza nivara
ONIVA07G09640
N
0.757
Pm009419
Prunus mume
Pm009419
N
0.757