Bra025635 (Brassica rapa)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 Bra025635 T239868_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.322 0.345
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025635.1-P HSF 10 110

Links

Other HSF family TFs
Other Brassica rapa TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g139200 Brassica oleracea Bo4g139200 I 0.552
Bra025608 Brassica rapa Bra025608 I 0.549
Bo4g139630 Brassica oleracea Bo4g139630 I 0.547
Bra025606 Brassica rapa Bra025606 I 0.537
Bo4g139270 Brassica oleracea Bo4g139270 N 0.523
Bra025611 Brassica rapa Bra025611 N 0.480
Bo4g139650 Brassica oleracea Bo4g139650 N 0.462
Thhalv10028027m.g Eutrema salsugineum Thhalv10028027m.g I 0.423
Bostr.20129s0193 Boechera stricta Bostr.20129s0193 I 0.400
Cagra.3262s0013 Capsella grandiflora Cagra.3262s0013 I 0.388
Carubv10006026m.g Capsella rubella Carubv10006026m.g I 0.384
Cagra.3262s0011 Capsella grandiflora Cagra.3262s0011 I 0.383
Carubv10006025m.g Capsella rubella Carubv10006025m.g I 0.383
Cagra.3262s0014 Capsella grandiflora Cagra.3262s0014 I 0.382
scaffold_702441.1 Arabidopsis lyrata scaffold_702441.1 I 0.368
scaffold_702446.1 Arabidopsis lyrata scaffold_702446.1 N 0.367
Bra030021 Brassica rapa Bra030021 I 0.364
scaffold_600621.1 Arabidopsis lyrata scaffold_600621.1 I 0.361
Carubv10021131m.g Capsella rubella Carubv10021131m.g I 0.355
Cagra.0096s0075 Capsella grandiflora Cagra.0096s0075 I 0.355
AT1G77570 Arabidopsis thaliana AT1G77570 I 0.353
Bra030341 Brassica rapa Bra030341 I 0.349
Thhalv10028026m.g Eutrema salsugineum Thhalv10028026m.g I 0.348
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.348
Cagra.3262s0012 Capsella grandiflora Cagra.3262s0012 I 0.340
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I 0.337
Bra002882 Brassica rapa Bra002882 I 0.337
Bra025632 Brassica rapa Bra025632 N 0.334
Solyc02g090820.2 Solanum lycopersicum Solyc02g090820.2 I 0.333
PGSC0003DMG401004023 Solanum tuberosum PGSC0003DMG401004023 I 0.333
Lus10040911.g Linum usitatissimum Lus10040911.g I 0.332
MTR_5g017470 Medicago truncatula MTR_5g017470 I 0.330
Carubv10024599m.g Capsella rubella Carubv10024599m.g I 0.329
MDP0000126826 Malus domestica MDP0000126826 I 0.328
PK02428.1 Cannabis sativa PK02428.1 I 0.328
Bo7g106320 Brassica oleracea Bo7g106320 I 0.328
Ca_09277 Cicer arietinum Ca_09277 I 0.328
Bra012571 Brassica rapa Bra012571 I 0.328
Aquca_020_00446 Aquilegia coerulea Aquca_020_00446 I 0.326
Bo3g157380 Brassica oleracea Bo3g157380 I 0.326
Bra013406 Brassica rapa Bra013406 I 0.325
Thhalv10026981m.g Eutrema salsugineum Thhalv10026981m.g N 0.325
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.324
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.323
Bo1g020010 Brassica oleracea Bo1g020010 I 0.323
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.323
Thhalv10026540m.g Eutrema salsugineum Thhalv10026540m.g I 0.322
HSFA4A Arabidopsis thaliana AT4G18880 D 0.322
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I 0.322
Bra013358 Brassica rapa Bra013358 I 0.322
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.322
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.322
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.322
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.322
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.322
Ca_08627 Cicer arietinum Ca_08627 I 0.321
AT4G19630 Arabidopsis thaliana AT4G19630 N 0.321
Thhalv10025090m.g Eutrema salsugineum Thhalv10025090m.g I 0.321
Thhalv10003411m.g Eutrema salsugineum Thhalv10003411m.g I 0.320
Pavir.Ba01265 Panicum virgatum Pavir.Ba01265 I 0.320
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.320
chr2.CM0304.780.nc Lotus japonicus chr2.CM0304.780.nc I 0.320
cassava7697.valid.m1 Manihot esculenta cassava7697.valid.m1 I 0.320
MDP0000260377 Malus domestica MDP0000260377 I 0.320
Lus10007318.g Linum usitatissimum Lus10007318.g I 0.320
Gorai.009G032300 Gossypium raimondii Gorai.009G032300 I 0.320
MDP0000150429 Malus domestica MDP0000150429 I 0.320
Bra020988 Brassica rapa Bra020988 I 0.319
PRUPE_ppa008441mg Prunus persica PRUPE_ppa008441mg I 0.319
Pm023788 Prunus mume Pm023788 I 0.319
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I 0.319
evm.TU.supercontig_2.169 Carica papaya evm.TU.supercontig_2.169 I 0.319
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.318