CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10006026m.g
(
Capsella rubella
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00447 (HSF_DNA-bind)
IPR000232
Carubv10006026m.g
T243051_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.337
0.382
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.321
0.360
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.321
0.360
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10006026m
HSF
12
104
FHMRIYKVVEDPSSDPIISWGKDNNSFVIWNLEEFTRKNIVGNFNCSRFSEFRSELRYYGFKGIKKGSGELEYGNEDFVRGQPERLKTMMIKA
Links
Other
HSF
family TFs
Other
Capsella rubella
TFs
154 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10006025m.g
Capsella rubella
Carubv10006025m.g
I
0.610
Cagra.3262s0011
Capsella grandiflora
Cagra.3262s0011
I
0.610
Cagra.3262s0014
Capsella grandiflora
Cagra.3262s0014
I
0.606
Cagra.3262s0013
Capsella grandiflora
Cagra.3262s0013
I
0.580
scaffold_702446.1
Arabidopsis lyrata
scaffold_702446.1
N
0.535
Cagra.3262s0012
Capsella grandiflora
Cagra.3262s0012
I
0.419
scaffold_702441.1
Arabidopsis lyrata
scaffold_702441.1
I
0.418
AT4G19630
Arabidopsis thaliana
AT4G19630
N
0.413
Bra025611
Brassica rapa
Bra025611
N
0.412
scaffold_600621.1
Arabidopsis lyrata
scaffold_600621.1
I
0.403
Bostr.20129s0193
Boechera stricta
Bostr.20129s0193
I
0.400
Bra025606
Brassica rapa
Bra025606
I
0.391
Bo4g139630
Brassica oleracea
Bo4g139630
I
0.388
Bra025635
Brassica rapa
Bra025635
I
0.384
Bra025608
Brassica rapa
Bra025608
I
0.380
Bo4g139200
Brassica oleracea
Bo4g139200
I
0.379
Thhalv10026540m.g
Eutrema salsugineum
Thhalv10026540m.g
I
0.377
Bostr.30275s0431
Boechera stricta
Bostr.30275s0431
I
0.373
Bo4g139270
Brassica oleracea
Bo4g139270
N
0.371
Bostr.27895s0020
Boechera stricta
Bostr.27895s0020
N
0.371
Cagra.0096s0075
Capsella grandiflora
Cagra.0096s0075
I
0.368
Carubv10021131m.g
Capsella rubella
Carubv10021131m.g
I
0.368
Al_scaffold_0003_3814
Arabidopsis lyrata
Al_scaffold_0003_3814
I
0.367
Bra002882
Brassica rapa
Bra002882
I
0.366
Thhalv10027510m.g
Eutrema salsugineum
Thhalv10027510m.g
I
0.364
Thhalv10028027m.g
Eutrema salsugineum
Thhalv10028027m.g
I
0.363
Thhalv10028026m.g
Eutrema salsugineum
Thhalv10028026m.g
I
0.362
Carubv10014950m.g
Capsella rubella
Carubv10014950m.g
N
0.359
Bra030021
Brassica rapa
Bra030021
I
0.359
Cagra.13025s0006
Capsella grandiflora
Cagra.13025s0006
I
0.358
Bostr.26959s0010
Boechera stricta
Bostr.26959s0010
I
0.358
AT1G77570
Arabidopsis thaliana
AT1G77570
I
0.354
Thhalv10012073m.g
Eutrema salsugineum
Thhalv10012073m.g
I
0.352
Bra013406
Brassica rapa
Bra013406
I
0.351
GRMZM2G115456
Zea mays
GRMZM2G115456
I
0.349
Gorai.007G053900
Gossypium raimondii
Gorai.007G053900
I
0.348
scaffold_702873.1
Arabidopsis lyrata
scaffold_702873.1
I
0.346
Thhalv10003411m.g
Eutrema salsugineum
Thhalv10003411m.g
I
0.345
Cagra.2516s0029
Capsella grandiflora
Cagra.2516s0029
N
0.345
VIT_10s0003g01770
Vitis vinifera
VIT_10s0003g01770
I
0.344
orange1.1g015635m.g
Citrus sinensis
orange1.1g015635m.g
I
0.344
Bostr.3359s0057
Boechera stricta
Bostr.3359s0057
I
0.343
Si035526m.g
Setaria italica
Si035526m.g
I
0.342
GRMZM2G384339
Zea mays
GRMZM2G384339
I
0.342
Pavir.Ib04475
Panicum virgatum
Pavir.Ib04475
I
0.342
ONIVA03G43540
Oryza nivara
ONIVA03G43540
I
0.340
Eucgr.I00929
Eucalyptus grandis
Eucgr.I00929
I
0.340
LPERR03G35390
Leersia perrieri
LPERR03G35390
I
0.340
HSFA1
Oryza sativa
OS03G0854500
I
0.340
ORGLA03G0383200
Oryza glaberrima
ORGLA03G0383200
I
0.340
OMERI03G38170
Oryza meridionalis
OMERI03G38170
I
0.340
OPUNC03G38490
Oryza punctata
OPUNC03G38490
I
0.340
OBART03G41440
Oryza barthii
OBART03G41440
I
0.340
OGLUM03G41290
Oryza glumaepatula
OGLUM03G41290
I
0.340
PK09831.1
Cannabis sativa
PK09831.1
I
0.338
Sb01g000730
Sorghum bicolor
Sb01g000730
I
0.338
POPTR_0011s06820
Populus trichocarpa
POPTR_0011s06820
I
0.338
GSMUA_Achr4G04500_001
Musa acuminata
GSMUA_Achr4G04500_001
I
0.338
Pavir.Ia00087
Panicum virgatum
Pavir.Ia00087
I
0.338
Cagra.4306s0004
Capsella grandiflora
Cagra.4306s0004
I
0.337
Bostr.30275s0365
Boechera stricta
Bostr.30275s0365
I
0.337
HSFA4A
Arabidopsis thaliana
AT4G18880
D
0.337
Bo1g020010
Brassica oleracea
Bo1g020010
I
0.337
Carubv10004953m.g
Capsella rubella
Carubv10004953m.g
I
0.337
Bra013358
Brassica rapa
Bra013358
I
0.337
AT-HSFA4A
Arabidopsis lyrata
fgenesh2_kg.7__2405__AT4G18880.1
I
0.337
Bra012571
Brassica rapa
Bra012571
I
0.337
Carubv10024599m.g
Capsella rubella
Carubv10024599m.g
I
0.337
Bo7g106320
Brassica oleracea
Bo7g106320
I
0.337
mgf006143m
Mimulus guttatus
mgf006143m
I
0.336
gene23802-v1.0-hybrid
Fragaria vesca
gene23802-v1.0-hybrid
I
0.336
MTR_8g087540
Medicago truncatula
MTR_8g087540
I
0.336
cassava14764.m1
Manihot esculenta
cassava14764.m1
I
0.335
cassava24811.valid.m1
Manihot esculenta
cassava24811.valid.m1
I
0.335
Lus10005420.g
Linum usitatissimum
Lus10005420.g
I
0.335
Lus10015237.g
Linum usitatissimum
Lus10015237.g
I
0.335
Gorai.N013300
Gossypium raimondii
Gorai.N013300
I
0.335
BRADI1G01130
Brachypodium distachyon
BRADI1G01130
I
0.335
MDP0000126826
Malus domestica
MDP0000126826
I
0.334
scaffold_601314.1
Arabidopsis lyrata
scaffold_601314.1
I
0.333
OLONG_013342
Oryza longistaminata
OLONG_013342
I
0.333
Thhalv10025409m.g
Eutrema salsugineum
Thhalv10025409m.g
I
0.333
SapurV1A.0181s0030
Salix purpurea
SapurV1A.0181s0030
I
0.333
evm.TU.supercontig_2.169
Carica papaya
evm.TU.supercontig_2.169
I
0.333
Cucsa.164290
Cucumis sativus
Cucsa.164290
I
0.332
orange1.1g016378m.g
Citrus sinensis
orange1.1g016378m.g
I
0.332
Gorai.011G036400
Gossypium raimondii
Gorai.011G036400
I
0.332
Ciclev10015541m.g
Citrus clementina
Ciclev10015541m.g
I
0.332
TRIUR3_08676
Triticum urartu
TRIUR3_08676
I
0.332
Carubv10004840m.g
Capsella rubella
Carubv10004840m.g
I
0.331
Cagra.3356s0067
Capsella grandiflora
Cagra.3356s0067
I
0.331
Gorai.010G240800
Gossypium raimondii
Gorai.010G240800
I
0.331
TCM_029630
Theobroma cacao
TCM_029630
I
0.331
GLYMA08G12630
Glycine max
GLYMA08G12630
I
0.331
Eucgr.E02813
Eucalyptus grandis
Eucgr.E02813
I
0.331
Solyc02g090820.2
Solanum lycopersicum
Solyc02g090820.2
I
0.330
PGSC0003DMG401004023
Solanum tuberosum
PGSC0003DMG401004023
I
0.330
Bo3g157380
Brassica oleracea
Bo3g157380
I
0.329
POPTR_0006s11680
Populus trichocarpa
POPTR_0006s11680
I
0.329
Bra020988
Brassica rapa
Bra020988
I
0.329
TCM_011279
Theobroma cacao
TCM_011279
I
0.329
Lus10007318.g
Linum usitatissimum
Lus10007318.g
I
0.328
GLYMA01G39260
Glycine max
GLYMA01G39260
I
0.328
Lus10029269.g
Linum usitatissimum
Lus10029269.g
I
0.328
GLYMA11G06010
Glycine max
GLYMA11G06010
I
0.328
GLYMA05G29470
Glycine max
GLYMA05G29470
I
0.328
Carubv10007409m.g
Capsella rubella
Carubv10007409m.g
I
0.327
SMU15027452
Schmidtea mediterranea
SMU15027452
I
0.327
Bo1g021700
Brassica oleracea
Bo1g021700
I
0.327
Aquca_014_00743
Aquilegia coerulea
Aquca_014_00743
I
0.326
Ciclev10015472m.g
Citrus clementina
Ciclev10015472m.g
I
0.325
Pm010169
Prunus mume
Pm010169
I
0.325
PRUPE_ppa006534mg
Prunus persica
PRUPE_ppa006534mg
I
0.325
PK02428.1
Cannabis sativa
PK02428.1
I
0.325
GLYMA13G29760
Glycine max
GLYMA13G29760
I
0.325
GSMUA_Achr3G27600_001
Musa acuminata
GSMUA_Achr3G27600_001
I
0.325
GSMUA_Achr3G06020_001
Musa acuminata
GSMUA_Achr3G06020_001
I
0.324
Bostr.11568s0011
Boechera stricta
Bostr.11568s0011
I
0.324
ONIVA03G35150
Oryza nivara
ONIVA03G35150
I
0.324
chr6.CM0118.920.nd
Lotus japonicus
chr6.CM0118.920.nd
I
0.324
OBART03G33860
Oryza barthii
OBART03G33860
I
0.323
OB03G40890
Oryza brachyantha
OB03G40890
I
0.323
OGLUM03G33530
Oryza glumaepatula
OGLUM03G33530
I
0.323
ORGLA03G0308600
Oryza glaberrima
ORGLA03G0308600
I
0.323
BGIOSGA009826
Oryza indica
BGIOSGA009826
I
0.323
Bo1g007320
Brassica oleracea
Bo1g007320
I
0.323
AT-HSFB3
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_4001910
I
0.323
PGSC0003DMG401027812
Solanum tuberosum
PGSC0003DMG401027812
I
0.323
ORUFI03G35260
Oryza rufipogon
ORUFI03G35260
I
0.323
Ca_08627
Cicer arietinum
Ca_08627
I
0.323
OPUNC03G31000
Oryza punctata
OPUNC03G31000
I
0.323
OMERI03G31070
Oryza meridionalis
OMERI03G31070
I
0.322
Traes_5BL_E15759DAD
Triticum aestivum
Traes_5BL_E15759DAD
I
0.322
POPTR_0004s06090
Populus trichocarpa
POPTR_0004s06090
I
0.322
HSF4
Populus trichocarpa
POPTR_0007s11030
I
0.322
Eucgr.C03465
Eucalyptus grandis
Eucgr.C03465
I
0.322
HSFB3
Arabidopsis thaliana
AT2G41690
D
0.321
MLOC_51191
Hordeum vulgare
MLOC_51191
I
0.321
Solyc03g006000.2
Solanum lycopersicum
Solyc03g006000.2
I
0.321
PK03562.1
Cannabis sativa
PK03562.1
I
0.321
Bra000235
Brassica rapa
Bra000235
I
0.321
evm.TU.supercontig_124.4
Carica papaya
evm.TU.supercontig_124.4
I
0.321
GLYMA11G01190
Glycine max
GLYMA11G01190
I
0.321
Bra022949
Brassica rapa
Bra022949
I
0.320
Eucgr.C03440
Eucalyptus grandis
Eucgr.C03440
I
0.320
PRUPE_ppa006514mg
Prunus persica
PRUPE_ppa006514mg
I
0.320
Pm005887
Prunus mume
Pm005887
I
0.320
Cucsa.378560
Cucumis sativus
Cucsa.378560
I
0.320
Lus10026819.g
Linum usitatissimum
Lus10026819.g
I
0.319
Bo1g005040
Brassica oleracea
Bo1g005040
I
0.319
ORUFI03G43230
Oryza rufipogon
ORUFI03G43230
I
0.319
Thhalv10017795m.g
Eutrema salsugineum
Thhalv10017795m.g
I
0.319
TRIUR3_25943
Triticum urartu
TRIUR3_25943
I
0.319
Ca_00428
Cicer arietinum
Ca_00428
I
0.319