Cagra.3262s0012 (Capsella grandiflora)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Cagra.3262s0012 T243028_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.333 0.375
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3262s0012.1.p HSF 13 105

Links

Other HSF family TFs
Other Capsella grandiflora TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT4G19630 Arabidopsis thaliana AT4G19630 N 0.493
Carubv10006026m.g Capsella rubella Carubv10006026m.g I 0.419
Carubv10006025m.g Capsella rubella Carubv10006025m.g I 0.417
Cagra.3262s0013 Capsella grandiflora Cagra.3262s0013 I 0.417
Cagra.3262s0011 Capsella grandiflora Cagra.3262s0011 I 0.417
Cagra.3262s0014 Capsella grandiflora Cagra.3262s0014 I 0.416
scaffold_702446.1 Arabidopsis lyrata scaffold_702446.1 N 0.392
scaffold_702441.1 Arabidopsis lyrata scaffold_702441.1 I 0.390
Al_scaffold_0003_3814 Arabidopsis lyrata Al_scaffold_0003_3814 I 0.368
AT1G77570 Arabidopsis thaliana AT1G77570 I 0.366
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.358
Thhalv10012073m.g Eutrema salsugineum Thhalv10012073m.g I 0.358
Bra017595 Brassica rapa Bra017595 I 0.351
Bo9g062710 Brassica oleracea Bo9g062710 I 0.351
Carubv10014950m.g Capsella rubella Carubv10014950m.g N 0.350
SCLCIDRAFT_1218516 Scleroderma citrinum SCLCIDRAFT_1218516 I 0.350
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I 0.349
Bo4g139270 Brassica oleracea Bo4g139270 N 0.346
Bostr.20129s0193 Boechera stricta Bostr.20129s0193 I 0.345
orange1.1g015635m.g Citrus sinensis orange1.1g015635m.g I 0.345
scaffold_600621.1 Arabidopsis lyrata scaffold_600621.1 I 0.345
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I 0.344
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I 0.344
Bra025611 Brassica rapa Bra025611 N 0.344
Bo4g139630 Brassica oleracea Bo4g139630 I 0.341
Bra025635 Brassica rapa Bra025635 I 0.340
Bra025606 Brassica rapa Bra025606 I 0.337
PK09831.1 Cannabis sativa PK09831.1 I 0.336
PGSC0003DMG401027812 Solanum tuberosum PGSC0003DMG401027812 I 0.336
Bostr.27895s0020 Boechera stricta Bostr.27895s0020 N 0.336
Bo4g139200 Brassica oleracea Bo4g139200 I 0.336
Thhalv10028026m.g Eutrema salsugineum Thhalv10028026m.g I 0.336
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.336
Bostr.8819s0096 Boechera stricta Bostr.8819s0096 I 0.335
AT-HSFA4C Arabidopsis lyrata fgenesh2_kg.8__230__AT5G45710.1 I 0.335
Thhalv10000950m.g Eutrema salsugineum Thhalv10000950m.g I 0.335
Bra002882 Brassica rapa Bra002882 I 0.334
Cagra.0796s0014 Capsella grandiflora Cagra.0796s0014 I 0.334
Gorai.N013300 Gossypium raimondii Gorai.N013300 I 0.334
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.334
Carubv10026722m.g Capsella rubella Carubv10026722m.g I 0.334
Ca_00428 Cicer arietinum Ca_00428 I 0.334
HSFA4A Arabidopsis thaliana AT4G18880 D 0.333
Bra012571 Brassica rapa Bra012571 I 0.333
Solyc03g006000.2 Solanum lycopersicum Solyc03g006000.2 I 0.333
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.333
Bo1g020010 Brassica oleracea Bo1g020010 I 0.333
Bo7g106320 Brassica oleracea Bo7g106320 I 0.333
Bra013358 Brassica rapa Bra013358 I 0.333
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.333
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.333
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.333
mgf006143m Mimulus guttatus mgf006143m I 0.332
Bra025608 Brassica rapa Bra025608 I 0.332
Bra030021 Brassica rapa Bra030021 I 0.332
PGSC0003DMG400028414 Solanum tuberosum PGSC0003DMG400028414 I 0.332
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.331
Solyc02g072000.2 Solanum lycopersicum Solyc02g072000.2 I 0.331
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.331
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.331
Lus10015237.g Linum usitatissimum Lus10015237.g I 0.331
Lus10005420.g Linum usitatissimum Lus10005420.g I 0.331
SapurV1A.0181s0030 Salix purpurea SapurV1A.0181s0030 I 0.331
MDP0000126826 Malus domestica MDP0000126826 I 0.331
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I 0.330
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.330
Bo1g007320 Brassica oleracea Bo1g007320 I 0.330
Gorai.010G240800 Gossypium raimondii Gorai.010G240800 I 0.329
Pm005887 Prunus mume Pm005887 I 0.329
TCM_029630 Theobroma cacao TCM_029630 I 0.329
Sb03g034630 Sorghum bicolor Sb03g034630 I 0.329
TCM_011279 Theobroma cacao TCM_011279 I 0.329
HSFA4C Arabidopsis thaliana AT5G45710 I 0.329
PRUPE_ppa006514mg Prunus persica PRUPE_ppa006514mg I 0.329
Ca_09277 Cicer arietinum Ca_09277 I 0.328
OB01G39790 Oryza brachyantha OB01G39790 I 0.328
Lus10029269.g Linum usitatissimum Lus10029269.g I 0.327
Bra013406 Brassica rapa Bra013406 I 0.327
OPUNC01G15930 Oryza punctata OPUNC01G15930 I 0.327
Carubv10021131m.g Capsella rubella Carubv10021131m.g I 0.327
Cagra.0096s0075 Capsella grandiflora Cagra.0096s0075 I 0.327
Lus10007318.g Linum usitatissimum Lus10007318.g I 0.327
Pavir.Eb03132 Panicum virgatum Pavir.Eb03132 I 0.327
Aquca_020_00446 Aquilegia coerulea Aquca_020_00446 I 0.327
Si001439m.g Setaria italica Si001439m.g I 0.327
GLYMA05G29470 Glycine max GLYMA05G29470 I 0.326
Cla009875 Citrullus lanatus Cla009875 I 0.326
Bo1g021700 Brassica oleracea Bo1g021700 I 0.326
BN946_scf185014.g98 Trametes cinnabarina BN946_scf185014.g98 I 0.326
Bo3g157380 Brassica oleracea Bo3g157380 I 0.326
Ciclev10015472m.g Citrus clementina Ciclev10015472m.g I 0.325
GRMZM2G118453 Zea mays GRMZM2G118453 I 0.325
scaffold_700890.1 Arabidopsis lyrata scaffold_700890.1 I 0.325
evm.TU.supercontig_2.169 Carica papaya evm.TU.supercontig_2.169 I 0.325
Bo6g106450 Brassica oleracea Bo6g106450 I 0.325
Bra004272 Brassica rapa Bra004272 I 0.325
Bra030341 Brassica rapa Bra030341 I 0.324
Thhalv10018723m.g Eutrema salsugineum Thhalv10018723m.g I 0.324
SapurV1A.1190s0030 Salix purpurea SapurV1A.1190s0030 I 0.324
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.324
Carubv10007333m.g Capsella rubella Carubv10007333m.g I 0.324
Cagra.13025s0005 Capsella grandiflora Cagra.13025s0005 I 0.324
scaffold_702873.1 Arabidopsis lyrata scaffold_702873.1 I 0.324
Cucsa.047180 Cucumis sativus Cucsa.047180 I 0.324
Cagra.2848s0007 Capsella grandiflora Cagra.2848s0007 I 0.324
MDP0000191541 Malus domestica MDP0000191541 I 0.322
LPERR01G26480 Leersia perrieri LPERR01G26480 I 0.322
Ca_08627 Cicer arietinum Ca_08627 I 0.322
chr6.CM0118.920.nd Lotus japonicus chr6.CM0118.920.nd I 0.322
Lus10022083.g Linum usitatissimum Lus10022083.g I 0.322
Bostr.26959s0105 Boechera stricta Bostr.26959s0105 I 0.322
PK03562.1 Cannabis sativa PK03562.1 I 0.322
Carubv10004729m.g Capsella rubella Carubv10004729m.g I 0.321
mgf013331m Mimulus guttatus mgf013331m I 0.321
Cagra.4610s0006 Capsella grandiflora Cagra.4610s0006 I 0.321
GLYMA13G29760 Glycine max GLYMA13G29760 I 0.321
SapurV1A.0029s0230 Salix purpurea SapurV1A.0029s0230 I 0.321
SapurV1A.3884s0010 Salix purpurea SapurV1A.3884s0010 I 0.321
cassava7697.valid.m1 Manihot esculenta cassava7697.valid.m1 I 0.320
POPTR_0004s06090 Populus trichocarpa POPTR_0004s06090 I 0.320
Bra032752 Brassica rapa Bra032752 I 0.320
Solyc02g090820.2 Solanum lycopersicum Solyc02g090820.2 I 0.320
HSFA5 Arabidopsis thaliana AT4G13980 I 0.320
AT-HSFA5 Arabidopsis lyrata fgenesh2_kg.7__2946__AT4G13980.1 I 0.320
Thhalv10025090m.g Eutrema salsugineum Thhalv10025090m.g I 0.320
PGSC0003DMG401004023 Solanum tuberosum PGSC0003DMG401004023 I 0.320
Bostr.9017s0008 Boechera stricta Bostr.9017s0008 I 0.320
BGIOSGA004459 Oryza indica BGIOSGA004459 I 0.319
Thhalv10003411m.g Eutrema salsugineum Thhalv10003411m.g I 0.319
HSFA4B Oryza sativa OS01G0749300 I 0.319
OGLUM01G35030 Oryza glumaepatula OGLUM01G35030 I 0.319
GRMZM2G115456 Zea mays GRMZM2G115456 I 0.319
OBART01G30880 Oryza barthii OBART01G30880 I 0.319
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I 0.319
OMERI01G28000 Oryza meridionalis OMERI01G28000 I 0.319
ORGLA01G0253200 Oryza glaberrima ORGLA01G0253200 I 0.319
ONIVA01G35260 Oryza nivara ONIVA01G35260 I 0.319
PK02428.1 Cannabis sativa PK02428.1 I 0.318
BRADI2G49860 Brachypodium distachyon BRADI2G49860 I 0.318