Bra004393 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra004393 T253233_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004393.1-P MADS box 10 55

Links

Other MADS box family TFs
Other Brassica rapa TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g109050 Brassica oleracea Bo6g109050 I 1.000
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.870
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.848
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.826
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.826
MDP0000919323 Malus domestica MDP0000919323 I 0.804
MDP0000146415 Malus domestica MDP0000146415 I 0.804
MDP0000147667 Malus domestica MDP0000147667 I 0.804
Ca_16376 Cicer arietinum Ca_16376 I 0.804
MDP0000773068 Malus domestica MDP0000773068 I 0.804
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.783
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.783
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.783
Pm006479 Prunus mume Pm006479 I 0.783
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.783
Cla010361 Citrullus lanatus Cla010361 I 0.783
Ca_18082 Cicer arietinum Ca_18082 I 0.783
MDP0000146231 Malus domestica MDP0000146231 I 0.783
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.783
PK03147.1 Cannabis sativa PK03147.1 I 0.783
AGL94 Arabidopsis thaliana AT1G69540 N 0.783
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.783
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.783
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.783
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.783
29813.m001508 Ricinus communis 29813.m001508 I 0.783
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.761
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.761
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.761
Bo9g072860 Brassica oleracea Bo9g072860 N 0.761
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.761
Bra016544 Brassica rapa Bra016544 I 0.739
Bra017404 Brassica rapa Bra017404 I 0.739
Bra024792 Brassica rapa Bra024792 I 0.739
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.739
Bra031049 Brassica rapa Bra031049 I 0.739
Bo8g104060 Brassica oleracea Bo8g104060 I 0.739
PK21701.1 Cannabis sativa PK21701.1 I 0.739
Bo7g080890 Brassica oleracea Bo7g080890 I 0.739
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.739
Bo8g068060 Brassica oleracea Bo8g068060 I 0.739
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.739
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.739
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.739
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.739
TCM_011687 Theobroma cacao TCM_011687 I 0.739
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.739
Cla018884 Citrullus lanatus Cla018884 I 0.739
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.739
AGL65 Arabidopsis thaliana AT1G18750 D 0.717
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.717
AGL30 Arabidopsis thaliana AT2G03060 I 0.717
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.717
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.717
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.717
30138.m004061 Ricinus communis 30138.m004061 I 0.717
Bra025685 Brassica rapa Bra025685 I 0.717
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.717
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.717
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.717
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.717