Thhalv10018691m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10018691m.g T259147_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10018691m MADS box 10 55

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.891
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.826
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.826
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.826
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.804
29813.m001508 Ricinus communis 29813.m001508 I 0.783
AGL94 Arabidopsis thaliana AT1G69540 N 0.783
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.761
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.761
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.761
Pm006479 Prunus mume Pm006479 I 0.761
TCM_011687 Theobroma cacao TCM_011687 I 0.761
PK03147.1 Cannabis sativa PK03147.1 I 0.761
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.761
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.761
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.761
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.761
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.761
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.761
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.761
Bo6g109050 Brassica oleracea Bo6g109050 I 0.761
Bra004393 Brassica rapa Bra004393 I 0.761
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.761
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.761
MDP0000146415 Malus domestica MDP0000146415 I 0.739
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.739
MDP0000147667 Malus domestica MDP0000147667 I 0.739
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.739
MDP0000919323 Malus domestica MDP0000919323 I 0.739
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.739
AGL30 Arabidopsis thaliana AT2G03060 I 0.739
Bra017404 Brassica rapa Bra017404 I 0.739
MDP0000773068 Malus domestica MDP0000773068 I 0.739
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.739
Ca_16376 Cicer arietinum Ca_16376 I 0.739
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.739
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.717
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.717
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.717
Bo7g080890 Brassica oleracea Bo7g080890 I 0.717
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.717
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.717
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.717
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.717
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.717
AGL65 Arabidopsis thaliana AT1G18750 D 0.717
Ca_18082 Cicer arietinum Ca_18082 I 0.717
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.717
Bo9g072860 Brassica oleracea Bo9g072860 N 0.717
Bo8g104060 Brassica oleracea Bo8g104060 I 0.717
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.717
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.717
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.717
Bra024792 Brassica rapa Bra024792 I 0.717
Bo8g068060 Brassica oleracea Bo8g068060 I 0.717
MDP0000146231 Malus domestica MDP0000146231 I 0.717
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.717
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.717
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.717
Bra031049 Brassica rapa Bra031049 I 0.717
Bra016544 Brassica rapa Bra016544 I 0.717