CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
chr4.CM0087.920.nd
(
Lotus japonicus
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
chr4.CM0087.920.nd
T259333_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.809
0.809
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr4.CM0087.920.nd
MADS box
10
56
KLESTSNRHVTYSKRKSGILKKAKELSILCDVDIILLMFSPTGKPTL
Links
Other
MADS box
family TFs
Other
Lotus japonicus
TFs
102 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.936
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.935
TCM_014051
Theobroma cacao
TCM_014051
I
0.872
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.857
Bra016544
Brassica rapa
Bra016544
I
0.854
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.854
Bra031049
Brassica rapa
Bra031049
I
0.854
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.854
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.851
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.851
Bra025685
Brassica rapa
Bra025685
I
0.851
30138.m004061
Ricinus communis
30138.m004061
I
0.833
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.833
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.833
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.833
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.830
OGLUM11G21110
Oryza glumaepatula
OGLUM11G21110
N
0.826
OLONG_008007
Oryza longistaminata
OLONG_008007
N
0.826
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.826
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.826
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.826
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.826
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.826
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.826
F775_13266
Aegilops tauschii
F775_13266
I
0.826
LPERR11G18320
Leersia perrieri
LPERR11G18320
N
0.826
MDP0000193129
Malus domestica
MDP0000193129
I
0.812
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.812
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.812
PK21701.1
Cannabis sativa
PK21701.1
I
0.812
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.812
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.812
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.809
Pm024895
Prunus mume
Pm024895
I
0.809
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.809
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.809
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.809
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.809
ORGLA11G0175900
Oryza glaberrima
ORGLA11G0175900
N
0.804
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.804
ORUFI11G23650
Oryza rufipogon
ORUFI11G23650
N
0.804
OS11G0658700
Oryza sativa
OS11G0658700
N
0.804
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.804
OBART11G21780
Oryza barthii
OBART11G21780
N
0.804
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.804
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.792
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.792
AGL65
Arabidopsis thaliana
AT1G18750
D
0.792
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.792
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.792
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.787
OPUNC11G18320
Oryza punctata
OPUNC11G18320
N
0.787
OMERI11G18020
Oryza meridionalis
OMERI11G18020
N
0.783
29813.m001508
Ricinus communis
29813.m001508
I
0.783
BGIOSGA035654
Oryza indica
BGIOSGA035654
N
0.783
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.771
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.771
Cla010361
Citrullus lanatus
Cla010361
I
0.766
TCM_011687
Theobroma cacao
TCM_011687
I
0.761
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.761
Si028357m.g
Setaria italica
Si028357m.g
N
0.761
Ciclev10031963m.g
Citrus clementina
Ciclev10031963m.g
I
0.745
Lus10026613.g
Linum usitatissimum
Lus10026613.g
I
0.745
Lus10030450.g
Linum usitatissimum
Lus10030450.g
I
0.745
cassava12018.valid.m1
Manihot esculenta
cassava12018.valid.m1
I
0.745
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.745
POPTR_0008s08780
Populus trichocarpa
POPTR_0008s08780
I
0.745
orange1.1g018825m.g
Citrus sinensis
orange1.1g018825m.g
I
0.745
Cla018884
Citrullus lanatus
Cla018884
I
0.745
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.745
PK03147.1
Cannabis sativa
PK03147.1
I
0.745
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.745
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.739
MDP0000146231
Malus domestica
MDP0000146231
I
0.739
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.739
Thhalv10019726m.g
Eutrema salsugineum
Thhalv10019726m.g
I
0.739
Ca_16376
Cicer arietinum
Ca_16376
I
0.739
MDP0000773068
Malus domestica
MDP0000773068
I
0.733
MDP0000146415
Malus domestica
MDP0000146415
I
0.733
MDP0000919323
Malus domestica
MDP0000919323
I
0.733
Solyc03g115910.1
Solanum lycopersicum
Solyc03g115910.1
I
0.729
Gorai.013G086600
Gossypium raimondii
Gorai.013G086600
N
0.723
AGL33
Populus trichocarpa
POPTR_0018s08400
N
0.723
SapurV1A.0458s0040
Salix purpurea
SapurV1A.0458s0040
I
0.723
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.717
Thhalv10018691m.g
Eutrema salsugineum
Thhalv10018691m.g
I
0.717
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.717
Pm006479
Prunus mume
Pm006479
I
0.717
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.717
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.717
Bo9g072860
Brassica oleracea
Bo9g072860
N
0.717
AGL30
Arabidopsis thaliana
AT2G03060
I
0.717
Ca_18082
Cicer arietinum
Ca_18082
I
0.717
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.717
mgf000945m
Mimulus guttatus
mgf000945m
I
0.708
mgf004425m
Mimulus guttatus
mgf004425m
I
0.708
Cagra.0534s0009
Capsella grandiflora
Cagra.0534s0009
I
0.702
Carubv10017440m.g
Capsella rubella
Carubv10017440m.g
I
0.702
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.702
PGSC0003DMG400019525
Solanum tuberosum
PGSC0003DMG400019525
N
0.702
MDP0000147667
Malus domestica
MDP0000147667
I
0.702
Bostr.0556s0119
Boechera stricta
Bostr.0556s0119
I
0.702