CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
LjSGA_031058.2
(
Lotus japonicus
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
LjSGA_031058.2
T259378_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.739
0.739
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_031058.2
MADS box
10
55
RLENTNGRQATYAKRKNGIIKKASELSILCDIDIILLMFSPSGKPS
Links
Other
MADS box
family TFs
Other
Lotus japonicus
TFs
104 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ca_18082
Cicer arietinum
Ca_18082
I
0.957
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.957
MDP0000146231
Malus domestica
MDP0000146231
I
0.935
MDP0000147667
Malus domestica
MDP0000147667
I
0.913
Ca_16376
Cicer arietinum
Ca_16376
I
0.913
MDP0000919323
Malus domestica
MDP0000919323
I
0.891
POPTR_0008s08780
Populus trichocarpa
POPTR_0008s08780
I
0.891
GLYMA07G35610
Glycine max
GLYMA07G35610
N
0.891
MDP0000773068
Malus domestica
MDP0000773068
I
0.891
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.891
Cla010361
Citrullus lanatus
Cla010361
I
0.891
Ciclev10031963m.g
Citrus clementina
Ciclev10031963m.g
I
0.891
29813.m001508
Ricinus communis
29813.m001508
I
0.891
MDP0000146415
Malus domestica
MDP0000146415
I
0.891
Pm006479
Prunus mume
Pm006479
I
0.891
PK03147.1
Cannabis sativa
PK03147.1
I
0.891
orange1.1g018825m.g
Citrus sinensis
orange1.1g018825m.g
I
0.891
SapurV1A.0458s0040
Salix purpurea
SapurV1A.0458s0040
I
0.870
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.870
Bo9g072860
Brassica oleracea
Bo9g072860
N
0.870
GLYMA20G04500
Glycine max
GLYMA20G04500
N
0.870
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.870
evm.TU.supercontig_1.45
Carica papaya
evm.TU.supercontig_1.45
N
0.870
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.848
GLYMA02G12131
Glycine max
GLYMA02G12131
N
0.848
TCM_011687
Theobroma cacao
TCM_011687
I
0.848
Lus10026613.g
Linum usitatissimum
Lus10026613.g
I
0.848
Bra017404
Brassica rapa
Bra017404
I
0.848
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.848
Lus10030450.g
Linum usitatissimum
Lus10030450.g
I
0.848
Gorai.013G086600
Gossypium raimondii
Gorai.013G086600
N
0.826
Bo7g080890
Brassica oleracea
Bo7g080890
I
0.826
cassava12018.valid.m1
Manihot esculenta
cassava12018.valid.m1
I
0.826
Bra024792
Brassica rapa
Bra024792
I
0.826
Lus10037166.g
Linum usitatissimum
Lus10037166.g
N
0.804
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.804
AGL30
Arabidopsis thaliana
AT2G03060
I
0.804
Lus10036761.g
Linum usitatissimum
Lus10036761.g
N
0.783
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.783
Bostr.0556s0119
Boechera stricta
Bostr.0556s0119
I
0.783
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.783
Carubv10017440m.g
Capsella rubella
Carubv10017440m.g
I
0.783
Cagra.0534s0009
Capsella grandiflora
Cagra.0534s0009
I
0.783
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.783
Bostr.10273s0411
Boechera stricta
Bostr.10273s0411
I
0.783
Gorai.005G142100
Gossypium raimondii
Gorai.005G142100
N
0.783
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.783
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.761
Bra016544
Brassica rapa
Bra016544
I
0.761
Bra004393
Brassica rapa
Bra004393
I
0.761
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.761
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.761
Bra025685
Brassica rapa
Bra025685
I
0.761
F775_13266
Aegilops tauschii
F775_13266
I
0.761
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.761
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.761
Bra031049
Brassica rapa
Bra031049
I
0.761
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.761
Bo6g109050
Brassica oleracea
Bo6g109050
I
0.761
PK21701.1
Cannabis sativa
PK21701.1
I
0.761
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.761
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.761
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.761
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.739
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.739
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.739
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.739
Thhalv10018691m.g
Eutrema salsugineum
Thhalv10018691m.g
I
0.739
30138.m004061
Ricinus communis
30138.m004061
I
0.739
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.739
AGL94
Arabidopsis lyrata
Al_scaffold_0002_1615
N
0.739
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.739
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.739
TCM_014051
Theobroma cacao
TCM_014051
I
0.739
AGL65
Arabidopsis thaliana
AT1G18750
D
0.739
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.739
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.739
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.739
Cla018884
Citrullus lanatus
Cla018884
I
0.739
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.739
AGL66
Arabidopsis lyrata
fgenesh2_kg.2__2091__AT1G77980.1
I
0.717
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.717
Carubv10021590m.g
Capsella rubella
Carubv10021590m.g
I
0.717
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.717
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.717
Thhalv10019726m.g
Eutrema salsugineum
Thhalv10019726m.g
I
0.717
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.717
Carubv10020210m.g
Capsella rubella
Carubv10020210m.g
I
0.717
AGL94
Arabidopsis thaliana
AT1G69540
N
0.717
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.717
AGL66
Arabidopsis thaliana
AT1G77980
I
0.717
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.717
OB08G26170
Oryza brachyantha
OB08G26170
I
0.717
29908.m005982
Ricinus communis
29908.m005982
I
0.717
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.717
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.717
mgf004425m
Mimulus guttatus
mgf004425m
I
0.717
Pm019181
Prunus mume
Pm019181
I
0.717
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.717
PRUPE_ppa007816mg
Prunus persica
PRUPE_ppa007816mg
I
0.717
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.717
Cagra.0887s0001
Capsella grandiflora
Cagra.0887s0001
I
0.717
Cagra.0096s0037
Capsella grandiflora
Cagra.0096s0037
I
0.717
mgf000945m
Mimulus guttatus
mgf000945m
I
0.717