CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_4g108720
(
Medicago truncatula
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
MTR_4g108720
T254787_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.848
0.848
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KEH31938
MADS box
10
55
KLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPT
Links
Other
MADS box
family TFs
Other
Medicago truncatula
TFs
105 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.936
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.935
Bra025685
Brassica rapa
Bra025685
I
0.894
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.875
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.875
Bra016544
Brassica rapa
Bra016544
I
0.875
Bra031049
Brassica rapa
Bra031049
I
0.875
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.854
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.854
30138.m004061
Ricinus communis
30138.m004061
I
0.833
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.833
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.833
TCM_014051
Theobroma cacao
TCM_014051
I
0.833
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.830
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.826
LPERR11G18320
Leersia perrieri
LPERR11G18320
N
0.826
OLONG_008007
Oryza longistaminata
OLONG_008007
N
0.826
OGLUM11G21110
Oryza glumaepatula
OGLUM11G21110
N
0.826
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.826
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.826
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.826
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.826
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.826
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.826
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.826
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.826
F775_13266
Aegilops tauschii
F775_13266
I
0.826
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.826
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.821
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.812
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.812
PK21701.1
Cannabis sativa
PK21701.1
I
0.812
AGL65
Arabidopsis thaliana
AT1G18750
D
0.812
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.812
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.812
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.812
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.812
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.809
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.809
Pm024895
Prunus mume
Pm024895
I
0.804
Si028357m.g
Setaria italica
Si028357m.g
N
0.804
ORUFI11G23650
Oryza rufipogon
ORUFI11G23650
N
0.804
ORGLA11G0175900
Oryza glaberrima
ORGLA11G0175900
N
0.804
OBART11G21780
Oryza barthii
OBART11G21780
N
0.804
OS11G0658700
Oryza sativa
OS11G0658700
N
0.804
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.804
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.804
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.792
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.792
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.792
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.792
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.792
BGIOSGA035654
Oryza indica
BGIOSGA035654
N
0.783
OMERI11G18020
Oryza meridionalis
OMERI11G18020
N
0.783
29813.m001508
Ricinus communis
29813.m001508
I
0.783
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.783
Cla010361
Citrullus lanatus
Cla010361
I
0.783
SapurV1A.0458s0040
Salix purpurea
SapurV1A.0458s0040
I
0.783
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.783
MDP0000193129
Malus domestica
MDP0000193129
I
0.771
Ciclev10031963m.g
Citrus clementina
Ciclev10031963m.g
I
0.761
Lus10030450.g
Linum usitatissimum
Lus10030450.g
I
0.761
PK03147.1
Cannabis sativa
PK03147.1
I
0.761
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.761
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.761
cassava12018.valid.m1
Manihot esculenta
cassava12018.valid.m1
I
0.761
Cla018884
Citrullus lanatus
Cla018884
I
0.761
orange1.1g018825m.g
Citrus sinensis
orange1.1g018825m.g
I
0.761
POPTR_0008s08780
Populus trichocarpa
POPTR_0008s08780
I
0.761
OPUNC11G18320
Oryza punctata
OPUNC11G18320
N
0.761
TCM_011687
Theobroma cacao
TCM_011687
I
0.761
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.761
Lus10026613.g
Linum usitatissimum
Lus10026613.g
I
0.761
MDP0000919323
Malus domestica
MDP0000919323
I
0.756
MDP0000146415
Malus domestica
MDP0000146415
I
0.756
MDP0000773068
Malus domestica
MDP0000773068
I
0.756
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.739
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.739
MDP0000147667
Malus domestica
MDP0000147667
I
0.739
MDP0000146231
Malus domestica
MDP0000146231
I
0.739
Pm006479
Prunus mume
Pm006479
I
0.739
Ca_16376
Cicer arietinum
Ca_16376
I
0.739
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.739
AGL30
Arabidopsis thaliana
AT2G03060
I
0.739
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.739
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.739
Bostr.0556s0119
Boechera stricta
Bostr.0556s0119
I
0.739
Carubv10017440m.g
Capsella rubella
Carubv10017440m.g
I
0.739
Cagra.0534s0009
Capsella grandiflora
Cagra.0534s0009
I
0.739
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.723
Bra004393
Brassica rapa
Bra004393
I
0.717
Bra024792
Brassica rapa
Bra024792
I
0.717
Bo9g072860
Brassica oleracea
Bo9g072860
N
0.717
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.717
Bo6g109050
Brassica oleracea
Bo6g109050
I
0.717
Thhalv10019726m.g
Eutrema salsugineum
Thhalv10019726m.g
I
0.717
Bo7g080890
Brassica oleracea
Bo7g080890
I
0.717
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.717
Ca_18082
Cicer arietinum
Ca_18082
I
0.717
Carubv10020210m.g
Capsella rubella
Carubv10020210m.g
I
0.717
Cagra.0887s0001
Capsella grandiflora
Cagra.0887s0001
I
0.717
mgf000945m
Mimulus guttatus
mgf000945m
I
0.708
Solyc03g115910.1
Solanum lycopersicum
Solyc03g115910.1
I
0.708
mgf004425m
Mimulus guttatus
mgf004425m
I
0.708
AGL33
Populus trichocarpa
POPTR_0018s08400
N
0.708