CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.4153s0004
(
Capsella grandiflora
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Cagra.4153s0004
T257703_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.938
0.938
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.4153s0004.1.p
MADS box
10
57
RLESTSNRQVTFTKRKNGILKKAKELSILCDIDIVLLMFSPTGKAIAF
Links
Other
MADS box
family TFs
Other
Capsella grandiflora
TFs
81 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
1.000
AGL65
Arabidopsis thaliana
AT1G18750
D
0.938
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.938
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.917
30138.m004061
Ricinus communis
30138.m004061
I
0.854
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.854
Bra016544
Brassica rapa
Bra016544
I
0.854
Bra031049
Brassica rapa
Bra031049
I
0.854
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.854
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.854
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.833
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.833
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.833
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.826
AGL30
Arabidopsis thaliana
AT2G03060
I
0.826
Bra025685
Brassica rapa
Bra025685
I
0.812
TCM_014051
Theobroma cacao
TCM_014051
I
0.812
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.812
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.792
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.792
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.792
PK21701.1
Cannabis sativa
PK21701.1
I
0.792
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.792
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.792
MDP0000193129
Malus domestica
MDP0000193129
I
0.792
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.787
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.783
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.783
MDP0000146415
Malus domestica
MDP0000146415
I
0.778
MDP0000919323
Malus domestica
MDP0000919323
I
0.778
MDP0000773068
Malus domestica
MDP0000773068
I
0.778
Pm024895
Prunus mume
Pm024895
I
0.771
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.771
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.771
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.771
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.771
Cagra.0534s0009
Capsella grandiflora
Cagra.0534s0009
I
0.771
Carubv10017440m.g
Capsella rubella
Carubv10017440m.g
I
0.771
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.771
Bostr.0556s0119
Boechera stricta
Bostr.0556s0119
I
0.771
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.761
Bo7g080890
Brassica oleracea
Bo7g080890
I
0.761
Bra017404
Brassica rapa
Bra017404
I
0.761
Bra024792
Brassica rapa
Bra024792
I
0.761
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.761
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.761
Pm006479
Prunus mume
Pm006479
I
0.761
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.750
MDP0000147667
Malus domestica
MDP0000147667
I
0.750
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.750
Cla010361
Citrullus lanatus
Cla010361
I
0.750
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.739
Carubv10020210m.g
Capsella rubella
Carubv10020210m.g
I
0.739
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.739
Thhalv10019726m.g
Eutrema salsugineum
Thhalv10019726m.g
I
0.739
29813.m001508
Ricinus communis
29813.m001508
I
0.739
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.739
Bo9g072860
Brassica oleracea
Bo9g072860
N
0.739
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.739
mgf004425m
Mimulus guttatus
mgf004425m
I
0.729
mgf000945m
Mimulus guttatus
mgf000945m
I
0.729
MDP0000146231
Malus domestica
MDP0000146231
I
0.729
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.729
Thhalv10018691m.g
Eutrema salsugineum
Thhalv10018691m.g
I
0.717
Bra004393
Brassica rapa
Bra004393
I
0.717
Bo6g109050
Brassica oleracea
Bo6g109050
I
0.717
TCM_011687
Theobroma cacao
TCM_011687
I
0.717
F775_13266
Aegilops tauschii
F775_13266
I
0.717
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.717
Ca_16376
Cicer arietinum
Ca_16376
I
0.717
Bostr.10273s0411
Boechera stricta
Bostr.10273s0411
I
0.717
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.717
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.717
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.717
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.708
Solyc03g115910.1
Solanum lycopersicum
Solyc03g115910.1
I
0.708
Cla018884
Citrullus lanatus
Cla018884
I
0.708
Ca_18082
Cicer arietinum
Ca_18082
I
0.708
Cagra.0887s0001
Capsella grandiflora
Cagra.0887s0001
I
0.708
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.708
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.702