29813.m001508 (Ricinus communis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 29813.m001508 T257148_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.739 0.739
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29813.m001508 MADS box 10 55

Links

Other MADS box family TFs
Other Ricinus communis TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.957
PK03147.1 Cannabis sativa PK03147.1 I 0.935
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.935
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.935
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.935
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.935
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.935
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.913
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.913
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.913
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.913
Cla010361 Citrullus lanatus Cla010361 I 0.891
Ca_16376 Cicer arietinum Ca_16376 I 0.891
Pm006479 Prunus mume Pm006479 I 0.891
TCM_011687 Theobroma cacao TCM_011687 I 0.891
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.891
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.891
MDP0000146231 Malus domestica MDP0000146231 I 0.891
MDP0000919323 Malus domestica MDP0000919323 I 0.870
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.870
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.870
MDP0000146415 Malus domestica MDP0000146415 I 0.870
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.870
MDP0000147667 Malus domestica MDP0000147667 I 0.870
Ca_18082 Cicer arietinum Ca_18082 I 0.870
MDP0000773068 Malus domestica MDP0000773068 I 0.870
Bo9g072860 Brassica oleracea Bo9g072860 N 0.848
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.848
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.848
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.848
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.826
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.826
Bra017404 Brassica rapa Bra017404 I 0.826
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.826
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.826
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.826
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.826
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.826
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.826
Bra024792 Brassica rapa Bra024792 I 0.804
AGL30 Arabidopsis thaliana AT2G03060 I 0.804
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.804
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.804
Bo7g080890 Brassica oleracea Bo7g080890 I 0.804
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.804
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.783
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.783
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.783
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.783
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.783
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.783
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.783
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.783
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.783
Bra025685 Brassica rapa Bra025685 I 0.783
Bra016544 Brassica rapa Bra016544 I 0.783
Bra031049 Brassica rapa Bra031049 I 0.783
F775_13266 Aegilops tauschii F775_13266 I 0.783
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.783
Bra004393 Brassica rapa Bra004393 I 0.783
Bo8g104060 Brassica oleracea Bo8g104060 I 0.783
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.783
AGL94 Arabidopsis thaliana AT1G69540 N 0.783
Bo6g109050 Brassica oleracea Bo6g109050 I 0.783
Bo8g068060 Brassica oleracea Bo8g068060 I 0.783
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.783
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.783
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.783
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.783
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.783
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.783
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.783
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.761
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.761
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.761
TCM_014051 Theobroma cacao TCM_014051 I 0.761
GLYMA02G12131 Glycine max GLYMA02G12131 N 0.761
mgf000945m Mimulus guttatus mgf000945m I 0.739
AGL65 Arabidopsis thaliana AT1G18750 D 0.739
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.739
30138.m004061 Ricinus communis 30138.m004061 I 0.739
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.739
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.739
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.739
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.739
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.739
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.739
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.739
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.739
mgf004425m Mimulus guttatus mgf004425m I 0.739
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.739
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.739
PK21701.1 Cannabis sativa PK21701.1 I 0.717
Cla018884 Citrullus lanatus Cla018884 I 0.717
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.717
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.717
OBART11G21780 Oryza barthii OBART11G21780 N 0.717
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.717
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.717
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.717
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.717
OS11G0658700 Oryza sativa OS11G0658700 N 0.717
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.717
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.717
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.717
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.717
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.717
Si028357m.g Setaria italica Si028357m.g N 0.717
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.717