CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AGL30
(
Arabidopsis thaliana
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
AT2G03060
T252865_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.783
0.783
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G03060.1
MADS box
10
55
KLENTNGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGKAA
AT2G03060.2
MADS box
10
55
KLENTNGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGKAA
AT2G03060.3
MADS box
10
55
KLENTNGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGKAA
AT2G03060.7
MADS box
10
55
KLENTNGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGKAA
Links
Other
MADS box
family TFs
Other
Arabidopsis thaliana
TFs
89 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.0556s0119
Boechera stricta
Bostr.0556s0119
I
0.978
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.978
Carubv10017440m.g
Capsella rubella
Carubv10017440m.g
I
0.957
Cagra.0534s0009
Capsella grandiflora
Cagra.0534s0009
I
0.957
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.935
Bra017404
Brassica rapa
Bra017404
I
0.891
Bo9g072860
Brassica oleracea
Bo9g072860
N
0.870
MDP0000146415
Malus domestica
MDP0000146415
I
0.870
MDP0000919323
Malus domestica
MDP0000919323
I
0.870
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.870
MDP0000773068
Malus domestica
MDP0000773068
I
0.870
MDP0000147667
Malus domestica
MDP0000147667
I
0.870
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.848
PK03147.1
Cannabis sativa
PK03147.1
I
0.848
SapurV1A.0458s0040
Salix purpurea
SapurV1A.0458s0040
I
0.848
orange1.1g018825m.g
Citrus sinensis
orange1.1g018825m.g
I
0.848
MDP0000146231
Malus domestica
MDP0000146231
I
0.848
POPTR_0008s08780
Populus trichocarpa
POPTR_0008s08780
I
0.848
Ciclev10031963m.g
Citrus clementina
Ciclev10031963m.g
I
0.848
Pm006479
Prunus mume
Pm006479
I
0.848
Bra024792
Brassica rapa
Bra024792
I
0.848
Bo7g080890
Brassica oleracea
Bo7g080890
I
0.848
Lus10030450.g
Linum usitatissimum
Lus10030450.g
I
0.826
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.826
Lus10026613.g
Linum usitatissimum
Lus10026613.g
I
0.826
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.826
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.826
Ca_16376
Cicer arietinum
Ca_16376
I
0.826
TCM_011687
Theobroma cacao
TCM_011687
I
0.826
Cla010361
Citrullus lanatus
Cla010361
I
0.804
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.804
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.804
29813.m001508
Ricinus communis
29813.m001508
I
0.804
Ca_18082
Cicer arietinum
Ca_18082
I
0.804
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.804
Bostr.10273s0411
Boechera stricta
Bostr.10273s0411
I
0.804
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.804
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.783
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.783
Cagra.0887s0001
Capsella grandiflora
Cagra.0887s0001
I
0.783
evm.TU.supercontig_1.45
Carica papaya
evm.TU.supercontig_1.45
N
0.783
AGL65
Arabidopsis thaliana
AT1G18750
D
0.783
Gorai.005G142100
Gossypium raimondii
Gorai.005G142100
N
0.783
Carubv10020210m.g
Capsella rubella
Carubv10020210m.g
I
0.783
Gorai.013G086600
Gossypium raimondii
Gorai.013G086600
N
0.783
Bra016544
Brassica rapa
Bra016544
I
0.761
Lus10037166.g
Linum usitatissimum
Lus10037166.g
N
0.761
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.761
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.761
GLYMA07G35610
Glycine max
GLYMA07G35610
N
0.761
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.761
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.761
AGL94
Arabidopsis lyrata
Al_scaffold_0002_1615
N
0.761
Bra031049
Brassica rapa
Bra031049
I
0.761
cassava12018.valid.m1
Manihot esculenta
cassava12018.valid.m1
I
0.761
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.761
Lus10036761.g
Linum usitatissimum
Lus10036761.g
N
0.739
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.739
AGL94
Arabidopsis thaliana
AT1G69540
N
0.739
MDP0000193129
Malus domestica
MDP0000193129
I
0.739
Bra025685
Brassica rapa
Bra025685
I
0.739
Cla018884
Citrullus lanatus
Cla018884
I
0.739
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.739
Thhalv10018691m.g
Eutrema salsugineum
Thhalv10018691m.g
I
0.739
GLYMA20G04500
Glycine max
GLYMA20G04500
N
0.739
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.739
Pm024895
Prunus mume
Pm024895
I
0.739
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.739
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.739
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.739
30138.m004061
Ricinus communis
30138.m004061
I
0.739
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.739
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.717
Thhalv10019726m.g
Eutrema salsugineum
Thhalv10019726m.g
I
0.717
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.717
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.717
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.717
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.717
F775_13266
Aegilops tauschii
F775_13266
I
0.717
Bra004393
Brassica rapa
Bra004393
I
0.717
Bo6g109050
Brassica oleracea
Bo6g109050
I
0.717
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.717
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.717
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.717
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.717
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.717
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.717
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.717