CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Thhalv10019726m.g
(
Eutrema salsugineum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Thhalv10019726m.g
T259160_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.739
0.739
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10019726m
MADS box
10
55
KLESFTPRQVTYAKRKHGIIKTAKELSILCDVDIVLLMFSPVGKAS
Links
Other
MADS box
family TFs
Other
Eutrema salsugineum
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Thhalv10018691m.g
Eutrema salsugineum
Thhalv10018691m.g
I
0.891
Cagra.0887s0001
Capsella grandiflora
Cagra.0887s0001
I
0.783
Carubv10020210m.g
Capsella rubella
Carubv10020210m.g
I
0.783
Bostr.10273s0411
Boechera stricta
Bostr.10273s0411
I
0.761
29813.m001508
Ricinus communis
29813.m001508
I
0.761
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.739
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.739
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.739
Carubv10017440m.g
Capsella rubella
Carubv10017440m.g
I
0.739
Cagra.0534s0009
Capsella grandiflora
Cagra.0534s0009
I
0.739
AGL94
Arabidopsis lyrata
Al_scaffold_0002_1615
N
0.739
Ciclev10031963m.g
Citrus clementina
Ciclev10031963m.g
I
0.739
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.739
PK03147.1
Cannabis sativa
PK03147.1
I
0.739
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.739
SapurV1A.0458s0040
Salix purpurea
SapurV1A.0458s0040
I
0.739
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.739
Gorai.005G142100
Gossypium raimondii
Gorai.005G142100
N
0.739
orange1.1g018825m.g
Citrus sinensis
orange1.1g018825m.g
I
0.739
Pm006479
Prunus mume
Pm006479
I
0.739
Bostr.0556s0119
Boechera stricta
Bostr.0556s0119
I
0.739
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.739
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.739
Bra031049
Brassica rapa
Bra031049
I
0.739
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.739
Bra016544
Brassica rapa
Bra016544
I
0.739
POPTR_0008s08780
Populus trichocarpa
POPTR_0008s08780
I
0.739
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.739
TCM_011687
Theobroma cacao
TCM_011687
I
0.739
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.739
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.739
MDP0000919323
Malus domestica
MDP0000919323
I
0.733
MDP0000146415
Malus domestica
MDP0000146415
I
0.733
MDP0000773068
Malus domestica
MDP0000773068
I
0.733
MDP0000147667
Malus domestica
MDP0000147667
I
0.717
MDP0000193129
Malus domestica
MDP0000193129
I
0.717
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.717
Bo6g109050
Brassica oleracea
Bo6g109050
I
0.717
AGL30
Arabidopsis thaliana
AT2G03060
I
0.717
AGL94
Arabidopsis thaliana
AT1G69540
N
0.717
evm.TU.supercontig_1.45
Carica papaya
evm.TU.supercontig_1.45
N
0.717
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.717
cassava12018.valid.m1
Manihot esculenta
cassava12018.valid.m1
I
0.717
Pm024895
Prunus mume
Pm024895
I
0.717
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.717
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.717
Bra004393
Brassica rapa
Bra004393
I
0.717
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.717
Ca_16376
Cicer arietinum
Ca_16376
I
0.717
Bra025685
Brassica rapa
Bra025685
I
0.717
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.708
AGL65
Arabidopsis thaliana
AT1G18750
D
0.708
Gorai.013G086600
Gossypium raimondii
Gorai.013G086600
N
0.702