AGL65 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 fgenesh2_kg.1__2055__AT1G18750.1 T254013_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.979 0.979
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__2055__AT1G18750.1 MADS box 10 57

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL65 Arabidopsis thaliana AT1G18750 D 0.979
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.979
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.917
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.917
TCM_014051 Theobroma cacao TCM_014051 I 0.896
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.875
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.875
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.875
Bra031049 Brassica rapa Bra031049 I 0.875
Bo8g068060 Brassica oleracea Bo8g068060 I 0.875
Bo8g104060 Brassica oleracea Bo8g104060 I 0.875
Bra016544 Brassica rapa Bra016544 I 0.875
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.854
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.854
30138.m004061 Ricinus communis 30138.m004061 I 0.854
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.854
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.833
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.833
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.833
Bra025685 Brassica rapa Bra025685 I 0.833
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.833
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.833
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.812
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.812
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.809
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.804
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.792
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.792
PK21701.1 Cannabis sativa PK21701.1 I 0.792
MDP0000193129 Malus domestica MDP0000193129 I 0.792
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.783
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.783
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.783
F775_13266 Aegilops tauschii F775_13266 I 0.783
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.783
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.783
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.771
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.771
Pm024895 Prunus mume Pm024895 I 0.771
Pm006479 Prunus mume Pm006479 I 0.761
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.761
AGL30 Arabidopsis thaliana AT2G03060 I 0.761
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.761
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.761
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.761
MDP0000146415 Malus domestica MDP0000146415 I 0.756
MDP0000919323 Malus domestica MDP0000919323 I 0.756
MDP0000773068 Malus domestica MDP0000773068 I 0.756
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.750
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.739
29813.m001508 Ricinus communis 29813.m001508 I 0.739
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.739
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.739
MDP0000147667 Malus domestica MDP0000147667 I 0.729
mgf000945m Mimulus guttatus mgf000945m I 0.729
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.729
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.729
Cla010361 Citrullus lanatus Cla010361 I 0.729
mgf004425m Mimulus guttatus mgf004425m I 0.729
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.729
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.729
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.729
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.723
TCM_011687 Theobroma cacao TCM_011687 I 0.717
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.717
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.717
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.717
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.717
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.708
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.708
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.708
MDP0000146231 Malus domestica MDP0000146231 I 0.708
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.708
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.708