CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc03g115910.1
(
Solanum lycopersicum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Solyc03g115910.1
T256329_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.729
0.729
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc03g115910.1.1
MADS box
54
101
RLESHSNRQSTYCKRRCGILKKAQEISVLCDIDIILLLFSPTGKPTLF
Links
Other
MADS box
family TFs
Other
Solanum lycopersicum
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400019525
Solanum tuberosum
PGSC0003DMG400019525
N
0.917
mgf000945m
Mimulus guttatus
mgf000945m
I
0.833
mgf004425m
Mimulus guttatus
mgf004425m
I
0.833
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.812
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.812
TCM_014051
Theobroma cacao
TCM_014051
I
0.812
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.812
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.792
30138.m004061
Ricinus communis
30138.m004061
I
0.792
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.771
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.771
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.771
PK21701.1
Cannabis sativa
PK21701.1
I
0.771
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.771
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.766
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.761
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.750
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.750
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.750
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.750
Bra016544
Brassica rapa
Bra016544
I
0.750
Bra031049
Brassica rapa
Bra031049
I
0.750
Bra025685
Brassica rapa
Bra025685
I
0.750
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.750
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.739
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.739
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.729
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.729
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.729
AGL65
Arabidopsis thaliana
AT1G18750
D
0.729
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.729
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.729
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.729
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.717
MDP0000193129
Malus domestica
MDP0000193129
I
0.708
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.708
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.708
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.708