AGL30 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Al_scaffold_0005_228 T252785_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.783 0.783
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0005_228 MADS box 10 55

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL30 Arabidopsis thaliana AT2G03060 I 0.978
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.957
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.935
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.935
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.935
Bra017404 Brassica rapa Bra017404 I 0.870
MDP0000773068 Malus domestica MDP0000773068 I 0.867
MDP0000146415 Malus domestica MDP0000146415 I 0.867
MDP0000919323 Malus domestica MDP0000919323 I 0.867
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.848
MDP0000147667 Malus domestica MDP0000147667 I 0.848
Bo7g080890 Brassica oleracea Bo7g080890 I 0.848
Bra024792 Brassica rapa Bra024792 I 0.848
Bo9g072860 Brassica oleracea Bo9g072860 N 0.848
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.826
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.826
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.826
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.826
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.826
Pm006479 Prunus mume Pm006479 I 0.826
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.826
MDP0000146231 Malus domestica MDP0000146231 I 0.826
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.826
PK03147.1 Cannabis sativa PK03147.1 I 0.826
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.804
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.804
Ca_16376 Cicer arietinum Ca_16376 I 0.804
TCM_011687 Theobroma cacao TCM_011687 I 0.804
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.804
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.783
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.783
29813.m001508 Ricinus communis 29813.m001508 I 0.783
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.783
Cla010361 Citrullus lanatus Cla010361 I 0.783
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.783
Ca_18082 Cicer arietinum Ca_18082 I 0.783
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.783
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.761
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.761
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.761
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.761
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.761
Bo8g068060 Brassica oleracea Bo8g068060 I 0.761
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.761
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.761
Bra031049 Brassica rapa Bra031049 I 0.761
Bo8g104060 Brassica oleracea Bo8g104060 I 0.761
Bra016544 Brassica rapa Bra016544 I 0.761
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.761
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.761
AGL65 Arabidopsis thaliana AT1G18750 D 0.750
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.750
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.745
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.745
MDP0000193129 Malus domestica MDP0000193129 I 0.739
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.739
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.739
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.739
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.739
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.739
Cla018884 Citrullus lanatus Cla018884 I 0.739
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.739
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.739
Pm024895 Prunus mume Pm024895 I 0.739
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.739
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.739
Bra025685 Brassica rapa Bra025685 I 0.739
AGL94 Arabidopsis thaliana AT1G69540 N 0.717
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.717
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.717
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.717
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.717
F775_13266 Aegilops tauschii F775_13266 I 0.717
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.717
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.717
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.717
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.717
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.717
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.717
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.717
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.717
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.717
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.708
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.708
30138.m004061 Ricinus communis 30138.m004061 I 0.708