CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Cla010361
(
Citrullus lanatus
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Cla010361
T256959_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.783
0.783
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla010361
MADS box
10
55
RLENTNGRQATYSKRKNGIMKKAKELSILCDIDIILLMFSPTGKPN
Links
Other
MADS box
family TFs
Other
Citrullus lanatus
TFs
112 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.957
MDP0000146231
Malus domestica
MDP0000146231
I
0.935
MDP0000147667
Malus domestica
MDP0000147667
I
0.913
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.913
Ca_18082
Cicer arietinum
Ca_18082
I
0.913
MDP0000773068
Malus domestica
MDP0000773068
I
0.911
MDP0000919323
Malus domestica
MDP0000919323
I
0.911
MDP0000146415
Malus domestica
MDP0000146415
I
0.911
POPTR_0008s08780
Populus trichocarpa
POPTR_0008s08780
I
0.891
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.891
orange1.1g018825m.g
Citrus sinensis
orange1.1g018825m.g
I
0.891
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.891
Ca_16376
Cicer arietinum
Ca_16376
I
0.891
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.891
29813.m001508
Ricinus communis
29813.m001508
I
0.891
Pm006479
Prunus mume
Pm006479
I
0.891
Ciclev10031963m.g
Citrus clementina
Ciclev10031963m.g
I
0.891
PK03147.1
Cannabis sativa
PK03147.1
I
0.891
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.870
SapurV1A.0458s0040
Salix purpurea
SapurV1A.0458s0040
I
0.870
GLYMA07G35610
Glycine max
GLYMA07G35610
N
0.870
cassava12018.valid.m1
Manihot esculenta
cassava12018.valid.m1
I
0.870
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.870
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.851
TCM_011687
Theobroma cacao
TCM_011687
I
0.848
GLYMA20G04500
Glycine max
GLYMA20G04500
N
0.848
Lus10026613.g
Linum usitatissimum
Lus10026613.g
I
0.848
Lus10030450.g
Linum usitatissimum
Lus10030450.g
I
0.848
evm.TU.supercontig_1.45
Carica papaya
evm.TU.supercontig_1.45
N
0.826
Bo9g072860
Brassica oleracea
Bo9g072860
N
0.826
Lus10037166.g
Linum usitatissimum
Lus10037166.g
N
0.826
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.826
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.826
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.826
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.821
Gorai.013G086600
Gossypium raimondii
Gorai.013G086600
N
0.809
Bra025685
Brassica rapa
Bra025685
I
0.809
Bra017404
Brassica rapa
Bra017404
I
0.804
TCM_014051
Theobroma cacao
TCM_014051
I
0.804
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.804
Bostr.10273s0411
Boechera stricta
Bostr.10273s0411
I
0.804
AGL30
Arabidopsis thaliana
AT2G03060
I
0.804
GLYMA02G12131
Glycine max
GLYMA02G12131
N
0.804
Lus10036761.g
Linum usitatissimum
Lus10036761.g
N
0.804
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.792
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.792
Bra016544
Brassica rapa
Bra016544
I
0.792
Bra031049
Brassica rapa
Bra031049
I
0.792
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.792
Gorai.005G142100
Gossypium raimondii
Gorai.005G142100
N
0.783
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.783
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.783
Bostr.0556s0119
Boechera stricta
Bostr.0556s0119
I
0.783
Cagra.0534s0009
Capsella grandiflora
Cagra.0534s0009
I
0.783
F775_13266
Aegilops tauschii
F775_13266
I
0.783
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.783
Bra024792
Brassica rapa
Bra024792
I
0.783
Bo6g109050
Brassica oleracea
Bo6g109050
I
0.783
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.783
Carubv10017440m.g
Capsella rubella
Carubv10017440m.g
I
0.783
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.783
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.783
Bra004393
Brassica rapa
Bra004393
I
0.783
Bo7g080890
Brassica oleracea
Bo7g080890
I
0.783
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.783
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.783
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.771
30138.m004061
Ricinus communis
30138.m004061
I
0.771
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.771
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.766
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.766
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.766
AGL33
Populus trichocarpa
POPTR_0018s08400
N
0.761
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.761
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.761
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.761
Cla018884
Citrullus lanatus
Cla018884
I
0.761
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.761
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.761
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.750
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.750
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.750
AGL65
Arabidopsis thaliana
AT1G18750
D
0.750
PK21701.1
Cannabis sativa
PK21701.1
I
0.750
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.750
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.750
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.750
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.745
OLONG_008007
Oryza longistaminata
OLONG_008007
N
0.739
OGLUM11G21110
Oryza glumaepatula
OGLUM11G21110
N
0.739
AGL94
Arabidopsis thaliana
AT1G69540
N
0.739
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.739
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.739
Cagra.0887s0001
Capsella grandiflora
Cagra.0887s0001
I
0.739
Carubv10020210m.g
Capsella rubella
Carubv10020210m.g
I
0.739
GSMUA_Achr11G14240_001
Musa acuminata
GSMUA_Achr11G14240_001
N
0.739
LPERR11G18320
Leersia perrieri
LPERR11G18320
N
0.739
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.729
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.729
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.729
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.729
AGL94
Arabidopsis lyrata
Al_scaffold_0002_1615
N
0.723
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.717
Pm024895
Prunus mume
Pm024895
I
0.717
OMERI11G18020
Oryza meridionalis
OMERI11G18020
N
0.717
OBART11G21780
Oryza barthii
OBART11G21780
N
0.717
BGIOSGA035654
Oryza indica
BGIOSGA035654
N
0.717
ORGLA11G0175900
Oryza glaberrima
ORGLA11G0175900
N
0.717
ORUFI11G23650
Oryza rufipogon
ORUFI11G23650
N
0.717
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.717
OS11G0658700
Oryza sativa
OS11G0658700
N
0.717
Si028357m.g
Setaria italica
Si028357m.g
N
0.717