Cla010361 (Citrullus lanatus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cla010361 T256959_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.783 0.783
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla010361 MADS box 10 55

Links

Other MADS box family TFs
Other Citrullus lanatus TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.957
MDP0000146231 Malus domestica MDP0000146231 I 0.935
MDP0000147667 Malus domestica MDP0000147667 I 0.913
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.913
Ca_18082 Cicer arietinum Ca_18082 I 0.913
MDP0000773068 Malus domestica MDP0000773068 I 0.911
MDP0000919323 Malus domestica MDP0000919323 I 0.911
MDP0000146415 Malus domestica MDP0000146415 I 0.911
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.891
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.891
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.891
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.891
Ca_16376 Cicer arietinum Ca_16376 I 0.891
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.891
29813.m001508 Ricinus communis 29813.m001508 I 0.891
Pm006479 Prunus mume Pm006479 I 0.891
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.891
PK03147.1 Cannabis sativa PK03147.1 I 0.891
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.870
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.870
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.870
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.870
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.870
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.851
TCM_011687 Theobroma cacao TCM_011687 I 0.848
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.848
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.848
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.848
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.826
Bo9g072860 Brassica oleracea Bo9g072860 N 0.826
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.826
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.826
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.826
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.826
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.821
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.809
Bra025685 Brassica rapa Bra025685 I 0.809
Bra017404 Brassica rapa Bra017404 I 0.804
TCM_014051 Theobroma cacao TCM_014051 I 0.804
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.804
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.804
AGL30 Arabidopsis thaliana AT2G03060 I 0.804
GLYMA02G12131 Glycine max GLYMA02G12131 N 0.804
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.804
Bo8g104060 Brassica oleracea Bo8g104060 I 0.792
Bo8g068060 Brassica oleracea Bo8g068060 I 0.792
Bra016544 Brassica rapa Bra016544 I 0.792
Bra031049 Brassica rapa Bra031049 I 0.792
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.792
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.783
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.783
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.783
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.783
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.783
F775_13266 Aegilops tauschii F775_13266 I 0.783
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.783
Bra024792 Brassica rapa Bra024792 I 0.783
Bo6g109050 Brassica oleracea Bo6g109050 I 0.783
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.783
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.783
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.783
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.783
Bra004393 Brassica rapa Bra004393 I 0.783
Bo7g080890 Brassica oleracea Bo7g080890 I 0.783
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.783
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.783
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.771
30138.m004061 Ricinus communis 30138.m004061 I 0.771
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.771
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.766
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.766
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.766
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.761
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.761
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.761
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.761
Cla018884 Citrullus lanatus Cla018884 I 0.761
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.761
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.761
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.750
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.750
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.750
AGL65 Arabidopsis thaliana AT1G18750 D 0.750
PK21701.1 Cannabis sativa PK21701.1 I 0.750
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.750
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.750
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.750
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.745
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.739
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.739
AGL94 Arabidopsis thaliana AT1G69540 N 0.739
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.739
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.739
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.739
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.739
GSMUA_Achr11G14240_001 Musa acuminata GSMUA_Achr11G14240_001 N 0.739
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.739
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.729
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.729
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.729
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.729
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.723
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.717
Pm024895 Prunus mume Pm024895 I 0.717
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.717
OBART11G21780 Oryza barthii OBART11G21780 N 0.717
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.717
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.717
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.717
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.717
OS11G0658700 Oryza sativa OS11G0658700 N 0.717
Si028357m.g Setaria italica Si028357m.g N 0.717