CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AGL33
(
Populus trichocarpa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
POPTR_0018s08400
T255882_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0018s08400.1
MADS box
10
57
RLECVKARQAKYSKRKIGILKKAKELAILCDIDLALLMFSPTGKPTLY
Links
Other
MADS box
family TFs
Other
Populus trichocarpa
TFs
56 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0435s0010
Salix purpurea
SapurV1A.0435s0010
N
0.896
Ciclev10010259m.g
Citrus clementina
Ciclev10010259m.g
N
0.848
TCM_037394
Theobroma cacao
TCM_037394
N
0.812
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.786
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.783
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.771
29739.m003627
Ricinus communis
29739.m003627
N
0.771
PK21701.1
Cannabis sativa
PK21701.1
I
0.771
Bra025685
Brassica rapa
Bra025685
I
0.766
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.761
Cla010361
Citrullus lanatus
Cla010361
I
0.761
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.761
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.750
Bra016544
Brassica rapa
Bra016544
I
0.750
Gorai.012G090100
Gossypium raimondii
Gorai.012G090100
N
0.750
Gorai.012G090200
Gossypium raimondii
Gorai.012G090200
N
0.750
Gorai.010G096200
Gossypium raimondii
Gorai.010G096200
N
0.750
Gorai.012G090000
Gossypium raimondii
Gorai.012G090000
N
0.750
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.750
Bra031049
Brassica rapa
Bra031049
I
0.750
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.745
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.739
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.739
30138.m004061
Ricinus communis
30138.m004061
I
0.729
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.729
Gorai.010G096100
Gossypium raimondii
Gorai.010G096100
N
0.729
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.729
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.729
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.729
TCM_014051
Theobroma cacao
TCM_014051
I
0.729
Gorai.012G090300
Gossypium raimondii
Gorai.012G090300
N
0.729
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.723
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.723
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.723
MDP0000146231
Malus domestica
MDP0000146231
I
0.717
Lus10037166.g
Linum usitatissimum
Lus10037166.g
N
0.717
29813.m001508
Ricinus communis
29813.m001508
I
0.717
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.717
GSMUA_Achr11G14240_001
Musa acuminata
GSMUA_Achr11G14240_001
N
0.717
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.717
F775_13266
Aegilops tauschii
F775_13266
I
0.717
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.717
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.717
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.717
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.717
Pm006479
Prunus mume
Pm006479
I
0.717
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.717
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.717
MDP0000773068
Malus domestica
MDP0000773068
I
0.711
MDP0000146415
Malus domestica
MDP0000146415
I
0.711
MDP0000919323
Malus domestica
MDP0000919323
I
0.711
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.708
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.708
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.708
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.708
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.702