nhr-16 (Caenorhabditis elegans)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 WBGene00003615 T306140_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-86
M02415_2.00 		Caenorhabditis elegans
KTGTAGTC
GACTACAM		 PBM
Weirauch et al.(2014)
pTH8598 		0.923 0.714
nhr-70
M00695_2.00 		Caenorhabditis elegans
NYTGTAGYYD
HRRCTACARN		 PBM
Narasimhan et al.(2015)
pTH9174 		0.767 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
T12C9.6 Nuclear receptor 12 81

Links

Other Nuclear receptor family TFs
Other Caenorhabditis elegans TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nhr-109 Caenorhabditis elegans WBGene00003699 I 0.950
nhr-273 Caenorhabditis elegans WBGene00020460 I 0.946
nhr-86 Caenorhabditis elegans WBGene00003676 D 0.923
CRE18529 Caenorhabditis remanei CRE18529 I 0.921
CBG12152 Caenorhabditis briggsae CBG12152 I 0.921
CBN03440 Caenorhabditis brenneri CBN03440 I 0.892
scaffold1235-EXSNAP2012.2 Pristionchus exspectatus scaffold1235-EXSNAP2012.2 I 0.885
PPA29361 Pristionchus pacificus PPA29361 I 0.875
CBN04619 Caenorhabditis brenneri CBN04619 I 0.870
CRE17354 Caenorhabditis remanei CRE17354 I 0.869
CBN03769 Caenorhabditis brenneri CBN03769 I 0.868
CBN24070 Caenorhabditis brenneri CBN24070 I 0.857
nhr-28 Caenorhabditis elegans WBGene00003624 I 0.843
CJA10576 Caenorhabditis japonica CJA10576 I 0.843
CRE27659 Caenorhabditis remanei CRE27659 I 0.841
CBG16375 Caenorhabditis briggsae CBG16375 I 0.837
CBG03687 Caenorhabditis briggsae CBG03687 I 0.837
CRE17310 Caenorhabditis remanei CRE17310 I 0.828
CJA07390 Caenorhabditis japonica CJA07390 I 0.804
CJA04414 Caenorhabditis japonica CJA04414 I 0.804
CRE17355 Caenorhabditis remanei CRE17355 I 0.799
CBG20699 Caenorhabditis briggsae CBG20699 I 0.788
SMUV_0000909301 Syphacia muris SMUV_0000909301 I 0.777
SMUV_0000801801 Syphacia muris SMUV_0000801801 I 0.772
nhr-70 Caenorhabditis elegans WBGene00003660 D 0.767
CRE07801 Caenorhabditis remanei CRE07801 I 0.766
CRE09011 Caenorhabditis remanei CRE09011 I 0.766
L596_g27786 Steinernema carpocapsae L596_g27786 I 0.756
SMUV_0000886001 Syphacia muris SMUV_0000886001 I 0.752
EVEC_0001095701 Enterobius vermicularis EVEC_0001095701 I 0.752
nhr-53 Caenorhabditis elegans WBGene00003643 I 0.750