CBN03440 (Caenorhabditis brenneri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CBN03440 T301672_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-86
M02415_2.00 		Caenorhabditis elegans
KTGTAGTC
GACTACAM		 PBM
Weirauch et al.(2014)
pTH8598 		0.923 0.686
nhr-70
M00695_2.00 		Caenorhabditis elegans
NYTGTAGYYD
HRRCTACARN		 PBM
Narasimhan et al.(2015)
pTH9174 		0.850 0.643
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN03440 Nuclear receptor 5 74

Links

Other Nuclear receptor family TFs
Other Caenorhabditis brenneri TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG12152 Caenorhabditis briggsae CBG12152 I 0.958
CRE18529 Caenorhabditis remanei CRE18529 I 0.955
CBN03769 Caenorhabditis brenneri CBN03769 I 0.933
nhr-86 Caenorhabditis elegans WBGene00003676 D 0.923
CBN24070 Caenorhabditis brenneri CBN24070 I 0.923
CRE17354 Caenorhabditis remanei CRE17354 I 0.920
nhr-273 Caenorhabditis elegans WBGene00020460 I 0.916
nhr-109 Caenorhabditis elegans WBGene00003699 I 0.915
CRE17310 Caenorhabditis remanei CRE17310 I 0.904
nhr-16 Caenorhabditis elegans WBGene00003615 I 0.892
CBG03687 Caenorhabditis briggsae CBG03687 I 0.885
CRE17355 Caenorhabditis remanei CRE17355 I 0.876
CBG20699 Caenorhabditis briggsae CBG20699 I 0.869
CJA04414 Caenorhabditis japonica CJA04414 I 0.860
CJA07390 Caenorhabditis japonica CJA07390 I 0.860
nhr-70 Caenorhabditis elegans WBGene00003660 D 0.850
CRE07801 Caenorhabditis remanei CRE07801 I 0.849
CBG16375 Caenorhabditis briggsae CBG16375 I 0.839
CRE17308 Caenorhabditis remanei CRE17308 N 0.830
nhr-28 Caenorhabditis elegans WBGene00003624 I 0.824
CJA10576 Caenorhabditis japonica CJA10576 I 0.819
CBN04619 Caenorhabditis brenneri CBN04619 I 0.811
CRE27659 Caenorhabditis remanei CRE27659 I 0.808
L892_g8140 Steinernema scapterisci L892_g8140 I 0.789
nhr-12 Caenorhabditis elegans WBGene00003611 I 0.786
SMUV_0000801801 Syphacia muris SMUV_0000801801 I 0.786
scaffold1235-EXSNAP2012.2 Pristionchus exspectatus scaffold1235-EXSNAP2012.2 I 0.784
L893_g4569 Steinernema glaseri L893_g4569 I 0.773
L892_g8145 Steinernema scapterisci L892_g8145 I 0.772
SMUV_0000886001 Syphacia muris SMUV_0000886001 I 0.765
L893_g9517 Steinernema glaseri L893_g9517 I 0.763
EVEC_0001266201 Enterobius vermicularis EVEC_0001266201 I 0.758
CBN16902 Caenorhabditis brenneri CBN16902 I 0.752
PPA29361 Pristionchus pacificus PPA29361 I 0.748