nhr-273 (Caenorhabditis elegans)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 WBGene00020460 T306367_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-86
M02415_2.00 		Caenorhabditis elegans
KTGTAGTC
GACTACAM		 PBM
Weirauch et al.(2014)
pTH8598 		0.971 0.814
nhr-70
M00695_2.00 		Caenorhabditis elegans
NYTGTAGYYD
HRRCTACARN		 PBM
Narasimhan et al.(2015)
pTH9174 		0.857 0.643
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
T12C9.1 Nuclear receptor 11 80

Links

Other Nuclear receptor family TFs
Other Caenorhabditis elegans TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nhr-86 Caenorhabditis elegans WBGene00003676 D 0.971
nhr-109 Caenorhabditis elegans WBGene00003699 I 0.971
CRE18529 Caenorhabditis remanei CRE18529 I 0.970
CBG12152 Caenorhabditis briggsae CBG12152 I 0.970
nhr-16 Caenorhabditis elegans WBGene00003615 I 0.946
CRE17354 Caenorhabditis remanei CRE17354 I 0.946
CBN03769 Caenorhabditis brenneri CBN03769 I 0.946
CBN24070 Caenorhabditis brenneri CBN24070 I 0.942
CBG03687 Caenorhabditis briggsae CBG03687 I 0.931
CRE27659 Caenorhabditis remanei CRE27659 I 0.929
CJA10576 Caenorhabditis japonica CJA10576 I 0.929
nhr-28 Caenorhabditis elegans WBGene00003624 I 0.929
CRE17310 Caenorhabditis remanei CRE17310 I 0.927
CBG16375 Caenorhabditis briggsae CBG16375 I 0.924
CBN04619 Caenorhabditis brenneri CBN04619 I 0.923
CJA04414 Caenorhabditis japonica CJA04414 I 0.918
CJA07390 Caenorhabditis japonica CJA07390 I 0.918
CBN03440 Caenorhabditis brenneri CBN03440 I 0.916
CRE17355 Caenorhabditis remanei CRE17355 I 0.913
nhr-12 Caenorhabditis elegans WBGene00003611 I 0.895
scaffold1235-EXSNAP2012.2 Pristionchus exspectatus scaffold1235-EXSNAP2012.2 I 0.890
SMUV_0000801801 Syphacia muris SMUV_0000801801 I 0.889
L892_g8145 Steinernema scapterisci L892_g8145 I 0.882
L893_g4569 Steinernema glaseri L893_g4569 I 0.882
L892_g8140 Steinernema scapterisci L892_g8140 I 0.882
SMUV_0000886001 Syphacia muris SMUV_0000886001 I 0.882
CBN16902 Caenorhabditis brenneri CBN16902 I 0.881
PPA29361 Pristionchus pacificus PPA29361 I 0.881
CBG20699 Caenorhabditis briggsae CBG20699 I 0.871
CRE27174 Caenorhabditis remanei CRE27174 I 0.865
L889_g987 Steinernema feltiae L889_g987 I 0.863
L889_g9698 Steinernema feltiae L889_g9698 I 0.863
nhr-70 Caenorhabditis elegans WBGene00003660 D 0.857
CRE07801 Caenorhabditis remanei CRE07801 I 0.856
L893_g9517 Steinernema glaseri L893_g9517 I 0.856
L898_g10723 Steinernema monticolum L898_g10723 I 0.854
scaffold183-EXSNAP2012.18 Pristionchus exspectatus scaffold183-EXSNAP2012.18 I 0.852
PPA08785 Pristionchus pacificus PPA08785 I 0.852
scaffold260-EXSNAP2012.15 Pristionchus exspectatus scaffold260-EXSNAP2012.15 I 0.851
EVEC_0001266201 Enterobius vermicularis EVEC_0001266201 I 0.851
PPA10478 Pristionchus pacificus PPA10478 I 0.851
L596_g27786 Steinernema carpocapsae L596_g27786 I 0.847
L892_g10708 Steinernema scapterisci L892_g10708 I 0.841
L596_g9106 Steinernema carpocapsae L596_g9106 I 0.840
L898_g28806 Steinernema monticolum L898_g28806 I 0.834
L892_g8144 Steinernema scapterisci L892_g8144 I 0.832
CBG03688 Caenorhabditis briggsae CBG03688 I 0.820
BXY_1188800 Bursaphelenchus xylophilus BXY_1188800 N 0.818
L893_g2090 Steinernema glaseri L893_g2090 I 0.802
NECAME_01500 Necator americanus NECAME_01500 I 0.799
CRE09011 Caenorhabditis remanei CRE09011 I 0.794
SMUV_0000909301 Syphacia muris SMUV_0000909301 I 0.792
SMUV_0000721901 Syphacia muris SMUV_0000721901 I 0.790
L889_g10781 Steinernema feltiae L889_g10781 I 0.787
nhr-53 Caenorhabditis elegans WBGene00003643 I 0.785
EVEC_0001095701 Enterobius vermicularis EVEC_0001095701 I 0.768
CBG04789 Caenorhabditis briggsae CBG04789 I 0.762
CBN18264 Caenorhabditis brenneri CBN18264 I 0.756
L889_g17146 Steinernema feltiae L889_g17146 I 0.751