CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBG20699
(
Caenorhabditis briggsae
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CBG20699
T301592_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-70
M00695_2.00
Caenorhabditis elegans
NYTGTAGYYD
HRRCTACARN
PBM
Narasimhan et al.(2015)
pTH9174
0.984
0.871
nhr-86
M02415_2.00
Caenorhabditis elegans
KTGTAGTC
GACTACAM
PBM
Weirauch et al.(2014)
pTH8598
0.841
0.671
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG20699
Nuclear receptor
9
78
PPCSVCGEVGNGIHFGAEACRACAAFFRRSVALHKEYRCRGMGNCDILSTIRCMCRACRYAKCLNVGMKK
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis briggsae
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
nhr-70
Caenorhabditis elegans
WBGene00003660
D
0.984
CRE07801
Caenorhabditis remanei
CRE07801
I
0.981
CJA10576
Caenorhabditis japonica
CJA10576
I
0.899
CBG16375
Caenorhabditis briggsae
CBG16375
I
0.890
nhr-28
Caenorhabditis elegans
WBGene00003624
I
0.887
nhr-273
Caenorhabditis elegans
WBGene00020460
I
0.871
CBN03440
Caenorhabditis brenneri
CBN03440
I
0.869
CRE18529
Caenorhabditis remanei
CRE18529
I
0.866
CBG12152
Caenorhabditis briggsae
CBG12152
I
0.864
CBN04619
Caenorhabditis brenneri
CBN04619
I
0.860
CRE27659
Caenorhabditis remanei
CRE27659
I
0.851
nhr-86
Caenorhabditis elegans
WBGene00003676
D
0.841
nhr-109
Caenorhabditis elegans
WBGene00003699
I
0.840
CBN16902
Caenorhabditis brenneri
CBN16902
I
0.829
nhr-12
Caenorhabditis elegans
WBGene00003611
I
0.828
L892_g8145
Steinernema scapterisci
L892_g8145
I
0.816
L893_g4569
Steinernema glaseri
L893_g4569
I
0.816
CRE27174
Caenorhabditis remanei
CRE27174
I
0.810
BXY_1189000
Bursaphelenchus xylophilus
BXY_1189000
I
0.806
CBN03769
Caenorhabditis brenneri
CBN03769
I
0.797
BXY_1091200
Bursaphelenchus xylophilus
BXY_1091200
I
0.796
CBN22974
Caenorhabditis brenneri
CBN22974
I
0.789
nhr-16
Caenorhabditis elegans
WBGene00003615
I
0.788
L889_g987
Steinernema feltiae
L889_g987
I
0.785
L889_g9698
Steinernema feltiae
L889_g9698
I
0.785
CRE09011
Caenorhabditis remanei
CRE09011
I
0.782
nhr-53
Caenorhabditis elegans
WBGene00003643
I
0.774
SMUV_0000721901
Syphacia muris
SMUV_0000721901
I
0.766
CRE17354
Caenorhabditis remanei
CRE17354
I
0.765
CBN24070
Caenorhabditis brenneri
CBN24070
I
0.762
L889_g10781
Steinernema feltiae
L889_g10781
I
0.758
SMUV_0000801801
Syphacia muris
SMUV_0000801801
I
0.757
L893_g9517
Steinernema glaseri
L893_g9517
I
0.754
CJA07390
Caenorhabditis japonica
CJA07390
I
0.753
CJA04414
Caenorhabditis japonica
CJA04414
I
0.753