CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L892_g8144
(
Steinernema scapterisci
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
L892_g8144
T309307_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-86
M02415_2.00
Caenorhabditis elegans
KTGTAGTC
GACTACAM
PBM
Weirauch et al.(2014)
pTH8598
0.838
0.543
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L892_g8144.t1
Nuclear receptor
2
71
HICRVCGESSDGLHFGIYACRACAAFFRRSVLQQRKYFCRREKNCEIGNDARNMCRACRFQKCVRLGMST
Links
Other
Nuclear receptor
family TFs
Other
Steinernema scapterisci
TFs
57 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
L898_g28806
Steinernema monticolum
L898_g28806
I
0.983
L596_g27786
Steinernema carpocapsae
L596_g27786
I
0.983
L893_g2090
Steinernema glaseri
L893_g2090
I
0.978
L889_g10781
Steinernema feltiae
L889_g10781
I
0.962
SMUV_0000801801
Syphacia muris
SMUV_0000801801
I
0.913
L892_g8145
Steinernema scapterisci
L892_g8145
I
0.897
L893_g4569
Steinernema glaseri
L893_g4569
I
0.897
CBN04619
Caenorhabditis brenneri
CBN04619
I
0.893
nhr-109
Caenorhabditis elegans
WBGene00003699
I
0.888
CBG16375
Caenorhabditis briggsae
CBG16375
I
0.882
CRE18529
Caenorhabditis remanei
CRE18529
I
0.881
nhr-28
Caenorhabditis elegans
WBGene00003624
I
0.879
CJA10576
Caenorhabditis japonica
CJA10576
I
0.877
CBG12152
Caenorhabditis briggsae
CBG12152
I
0.876
CBN03769
Caenorhabditis brenneri
CBN03769
I
0.873
L893_g9517
Steinernema glaseri
L893_g9517
I
0.872
L892_g8140
Steinernema scapterisci
L892_g8140
I
0.870
CRE27659
Caenorhabditis remanei
CRE27659
I
0.867
SMUV_0000886001
Syphacia muris
SMUV_0000886001
I
0.867
EVEC_0001266201
Enterobius vermicularis
EVEC_0001266201
I
0.864
L889_g9698
Steinernema feltiae
L889_g9698
I
0.861
L889_g987
Steinernema feltiae
L889_g987
I
0.861
GPLIN_000628500
Globodera pallida
GPLIN_000628500
N
0.850
GPLIN_000805100
Globodera pallida
GPLIN_000805100
N
0.850
L898_g18539
Steinernema monticolum
L898_g18539
I
0.840
nhr-86
Caenorhabditis elegans
WBGene00003676
D
0.838
L898_g10723
Steinernema monticolum
L898_g10723
I
0.833
BXY_1188800
Bursaphelenchus xylophilus
BXY_1188800
N
0.833
nhr-273
Caenorhabditis elegans
WBGene00020460
I
0.832
CJA07390
Caenorhabditis japonica
CJA07390
I
0.826
CJA04414
Caenorhabditis japonica
CJA04414
I
0.826
nhr-53
Caenorhabditis elegans
WBGene00003643
I
0.815
CRE09011
Caenorhabditis remanei
CRE09011
I
0.814
scaffold183-EXSNAP2012.18
Pristionchus exspectatus
scaffold183-EXSNAP2012.18
I
0.813
PPA08785
Pristionchus pacificus
PPA08785
I
0.813
BXY_0973100
Bursaphelenchus xylophilus
BXY_0973100
I
0.812
scaffold260-EXSNAP2012.15
Pristionchus exspectatus
scaffold260-EXSNAP2012.15
I
0.810
PPA10478
Pristionchus pacificus
PPA10478
I
0.810
L596_g9106
Steinernema carpocapsae
L596_g9106
I
0.793
ASIM_0000109601
Anisakis simplex
ASIM_0000109601
N
0.784
CBG04789
Caenorhabditis briggsae
CBG04789
I
0.784
CRE17354
Caenorhabditis remanei
CRE17354
I
0.779
CBN24070
Caenorhabditis brenneri
CBN24070
I
0.778
L892_g10708
Steinernema scapterisci
L892_g10708
I
0.775
CBN18264
Caenorhabditis brenneri
CBN18264
I
0.772
BXY_1188900
Bursaphelenchus xylophilus
BXY_1188900
N
0.769
SMUV_0000909301
Syphacia muris
SMUV_0000909301
I
0.769
L898_g9580
Steinernema monticolum
L898_g9580
I
0.769
L893_g3450
Steinernema glaseri
L893_g3450
N
0.767
nhr-12
Caenorhabditis elegans
WBGene00003611
I
0.763
CBN16902
Caenorhabditis brenneri
CBN16902
I
0.763
L892_g8146
Steinernema scapterisci
L892_g8146
N
0.761
MhA1_Contig1462.frz3.gene15
Meloidogyne hapla
MhA1_Contig1462.frz3.gene15
I
0.759
L889_g16048
Steinernema feltiae
L889_g16048
N
0.755
L596_g24910
Steinernema carpocapsae
L596_g24910
N
0.754
NECAME_01500
Necator americanus
NECAME_01500
I
0.751
ASU_03038
Ascaris suum
ASU_03038
N
0.746