CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BRC1
(
Vitis vinifera
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
VIT_17s0000g04180
T344501_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP24
M02499_2.00
Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN
PBM
Weirauch et al.(2014)
pTH7337
0.931
0.391
TCP24
M07272_2.00
Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP24_colamp_a
0.931
0.391
TCP24
M07273_2.00
Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
TCP24_col
0.931
0.391
TCP24
M02506_2.00
Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN
PBM
Weirauch et al.(2014)
pTH9227
0.929
0.383
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VIT_17s0000g04180.t01
TCP
136
210
SSKRDRHSKINTARGPRDRRMRLSLEIARKFFDLQDMLGFDKASKTVEWLLIKAKSAIKELSRGGSISKGKRSKC
VIT_17s0000g04180.t01
TCP
199
251
GGSISKGKRSKCLTKERKTRQSRKNAFQPLARESREKARARARERTREKMWSR
Links
Other
TCP
family TFs
Other
Vitis vinifera
TFs
36 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10007109m.g
Citrus clementina
Ciclev10007109m.g
I
0.959
Ciclev10012612m.g
Citrus clementina
Ciclev10012612m.g
I
0.959
orange1.1g047495m.g
Citrus sinensis
orange1.1g047495m.g
I
0.959
Thhalv10018773m.g
Eutrema salsugineum
Thhalv10018773m.g
I
0.959
mgf025386m
Mimulus guttatus
mgf025386m
I
0.958
gene10333-v1.0-hybrid
Fragaria vesca
gene10333-v1.0-hybrid
I
0.958
Cla020670
Citrullus lanatus
Cla020670
I
0.958
Eucgr.G02354
Eucalyptus grandis
Eucgr.G02354
I
0.952
Bo6g107240
Brassica oleracea
Bo6g107240
I
0.951
PGSC0003DMG400010045
Solanum tuberosum
PGSC0003DMG400010045
I
0.949
Solyc02g089830.1
Solanum lycopersicum
Solyc02g089830.1
I
0.944
Bra032365
Brassica rapa
Bra032365
I
0.940
TCP24
Arabidopsis thaliana
AT1G30210
D
0.931
Bostr.15697s0315
Boechera stricta
Bostr.15697s0315
I
0.931
Bo5g062580
Brassica oleracea
Bo5g062580
I
0.930
ORUFI07G03030
Oryza rufipogon
ORUFI07G03030
I
0.929
TCP24
Arabidopsis lyrata
fgenesh2_kg.1__3195__AT1G30210.2
D
0.929
OBART07G03380
Oryza barthii
OBART07G03380
I
0.927
Lus10042962.g
Linum usitatissimum
Lus10042962.g
I
0.924
ORUFI02G34160
Oryza rufipogon
ORUFI02G34160
I
0.923
Thhalv10008175m.g
Eutrema salsugineum
Thhalv10008175m.g
I
0.921
OGLUM02G33090
Oryza glumaepatula
OGLUM02G33090
I
0.915
BGIOSGA025162
Oryza indica
BGIOSGA025162
I
0.913
OGLUM07G02670
Oryza glumaepatula
OGLUM07G02670
I
0.913
ONIVA07G01330
Oryza nivara
ONIVA07G01330
I
0.913
ORGLA07G0028600
Oryza glaberrima
ORGLA07G0028600
I
0.913
OS07G0152000
Oryza sativa
OS07G0152000
I
0.913
Lus10038512.g
Linum usitatissimum
Lus10038512.g
I
0.906
chr3.CM0282.560.nc
Lotus japonicus
chr3.CM0282.560.nc
I
0.905
Lus10017856.g
Linum usitatissimum
Lus10017856.g
I
0.866
mgf014960m
Mimulus guttatus
mgf014960m
I
0.864
Bo9g052090
Brassica oleracea
Bo9g052090
N
0.845
GLYMA16G05840
Glycine max
GLYMA16G05840
N
0.841
SELMODRAFT_429489
Selaginella moellendorffii
SELMODRAFT_429489
N
0.829
MTR_7g015010
Medicago truncatula
MTR_7g015010
I
0.829
SELMODRAFT_441321
Selaginella moellendorffii
SELMODRAFT_441321
N
0.829