Cmyd_10020160 (Chelonia mydas)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cmyd_10020160 T047120_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.914 1.000
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.914 1.000
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.914 1.000
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.914 1.000
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.914 1.000
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.914 1.000
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.914 1.000
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.914 1.000
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.912 0.962
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.912 0.962
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.912 0.962
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.912 0.962
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.912 0.962
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.912 0.962
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.912 0.962
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.912 0.962
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.912 0.962
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.912 0.962
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.912 0.962
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.912 0.962
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.912 0.885
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.912 0.885
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.912 0.885
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.884 0.923
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.884 0.923
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.884 0.923
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.884 0.885
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.884 0.885
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.884 0.885
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.884 0.885
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.884 0.885
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.884 0.885
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.884 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10020160 bHLH 386 439

Links

Other bHLH family TFs
Other Chelonia mydas TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28152.m000908 Ricinus communis 28152.m000908 I 0.000
29661.m000908 Ricinus communis 29661.m000908 I 0.000
30147.m014242 Ricinus communis 30147.m014242 I 0.000
30170.m013751 Ricinus communis 30170.m013751 I 0.000
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.000
ZAT10 Arabidopsis thaliana AT1G27730 D 0.000
ZAT11 Arabidopsis thaliana AT2G37430 I 0.000
ZAT4 Arabidopsis thaliana AT2G45120 D 0.000
AZF2 Arabidopsis thaliana AT3G19580 D 0.000
ZAT9 Arabidopsis thaliana AT3G60580 D 0.000
ZAT6 Arabidopsis thaliana AT5G04340 D 0.000
AZF3 Arabidopsis thaliana AT5G43170 I 0.000
AZF1 Arabidopsis thaliana AT5G67450 D 0.000
Bo1g081350 Brassica oleracea Bo1g081350 I 0.000
Bo1g113530 Brassica oleracea Bo1g113530 I 0.000
Bo2g168030 Brassica oleracea Bo2g168030 I 0.000
Bo3g037560 Brassica oleracea Bo3g037560 I 0.000
Bo3g142840 Brassica oleracea Bo3g142840 I 0.000
Bo4g195370 Brassica oleracea Bo4g195370 I 0.000
Bo5g052290 Brassica oleracea Bo5g052290 I 0.000
Bo5g113850 Brassica oleracea Bo5g113850 I 0.000
Bo7g048650 Brassica oleracea Bo7g048650 I 0.000
Bo7g065200 Brassica oleracea Bo7g065200 I 0.000
Bo9g019120 Brassica oleracea Bo9g019120 I 0.000
Bo9g181170 Brassica oleracea Bo9g181170 I 0.000
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.000
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.000
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.000
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.000
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.000
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.000
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.000
Bra000372 Brassica rapa Bra000372 I 0.000
Bra009464 Brassica rapa Bra009464 I 0.000
Bra010922 Brassica rapa Bra010922 I 0.000
Bra012914 Brassica rapa Bra012914 I 0.000
Bra022436 Brassica rapa Bra022436 I 0.000
Bra029985 Brassica rapa Bra029985 I 0.000
Bra031834 Brassica rapa Bra031834 I 0.000
Bra032845 Brassica rapa Bra032845 I 0.000
Bra033666 Brassica rapa Bra033666 I 0.000
Bra037845 Brassica rapa Bra037845 I 0.000
Bra038219 Brassica rapa Bra038219 I 0.000
Bra039806 Brassica rapa Bra039806 I 0.000
Bra040325 Brassica rapa Bra040325 I 0.000
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.000
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.000
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.000
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.000
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.000
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.000
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.000
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.000
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.000
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.000
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.000
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.000
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.000
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.000
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.000
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.000
Ca_01586 Cicer arietinum Ca_01586 I 0.000
Ca_05641 Cicer arietinum Ca_05641 I 0.000
Ca_18364 Cicer arietinum Ca_18364 I 0.000
Ca_23672 Cicer arietinum Ca_23672 I 0.000
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.000
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.000
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.000
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.000
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.000
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.000
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.000
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.000
Cla001400 Citrullus lanatus Cla001400 I 0.000
Cla022966 Citrullus lanatus Cla022966 I 0.000
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.000
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.000
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.000
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.000
Eucgr.B02397 Eucalyptus grandis Eucgr.B02397 I 0.000
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.000
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.000
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.000
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.000
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.000
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.000
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.000
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.000
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.000
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.000
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.000
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.000
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.000
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.000
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.000
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.000
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.000
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.000
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.000
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.000
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.000
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.000
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.000
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.000
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.000
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.000
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.000
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.000
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.000
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.000
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.000
MDP0000198015 Malus domestica MDP0000198015 I 0.000
MDP0000237150 Malus domestica MDP0000237150 I 0.000
MDP0000319225 Malus domestica MDP0000319225 I 0.000
MDP0000573176 Malus domestica MDP0000573176 I 0.000
MDP0000762756 Malus domestica MDP0000762756 I 0.000
mgf006006m Mimulus guttatus mgf006006m I 0.000
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.000
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.000
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.000
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.000
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.000
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.000
OB03G42170 Oryza brachyantha OB03G42170 I 0.000
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.000
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.000
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.000
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.000
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.000
PGSC0003DMG400015531 Solanum tuberosum PGSC0003DMG400015531 I 0.000
PGSC0003DMG400015532 Solanum tuberosum PGSC0003DMG400015532 I 0.000
PGSC0003DMG400015533 Solanum tuberosum PGSC0003DMG400015533 I 0.000
PGSC0003DMG400015534 Solanum tuberosum PGSC0003DMG400015534 I 0.000
PGSC0003DMG400015557 Solanum tuberosum PGSC0003DMG400015557 I 0.000
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.000
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.000
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.000
PK10188.1 Cannabis sativa PK10188.1 I 0.000
Pm005390 Prunus mume Pm005390 I 0.000
Pm021284 Prunus mume Pm021284 I 0.000
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.000
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.000
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.000
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.000
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.000
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.000
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.000
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.000
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.000
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.000
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.000
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.000
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.000
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.000
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.000
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.000
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.000
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.000
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.000
TCM_000780 Theobroma cacao TCM_000780 I 0.000
TCM_007214 Theobroma cacao TCM_007214 I 0.000
TCM_034720 Theobroma cacao TCM_034720 I 0.000
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.000
Thhalv10005323m.g Eutrema salsugineum Thhalv10005323m.g N 0.000
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.000
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.000
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.000
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.000
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.000
VIT_06s0009g02470 Vitis vinifera VIT_06s0009g02470 I 0.000
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.000
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.000
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.000