CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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bcl11ba
(
Tetraodon nigroviridis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTNIG00000008283
T112028_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.817
0.974
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.817
0.974
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.811
0.947
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.811
0.947
BCL11A
M10187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.811
0.947
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000011113
C2H2 ZF
384
405
SCEFCGKTFKFQSNLVVHRRSH
ENSTNIP00000011113
C2H2 ZF
411
433
YKCQLCDHACAQASKLKRHMKTH
ENSTNIP00000011113
C2H2 ZF
707
729
DTCEFCGKVFKNCSNLTVHRRSH
ENSTNIP00000011113
C2H2 ZF
735
757
YKCELCNYACAQSSKLTRHMKTH
ENSTNIP00000011113
C2H2 ZF
765
788
YRCDICQMPFSVYSTLEKHMKKWH
Links
Other
C2H2 ZF
family TFs
Other
Tetraodon nigroviridis
TFs
128 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
27494.m000045
Ricinus communis
27494.m000045
I
0.000
27538.m000327
Ricinus communis
27538.m000327
I
0.000
29908.m005953
Ricinus communis
29908.m005953
I
0.000
30078.m002329
Ricinus communis
30078.m002329
I
0.000
AC207656.3_FG002
Zea mays
AC207656.3_FG002
I
0.000
AMTR_s00148p00046020
Amborella trichopoda
AMTR_s00148p00046020
I
0.000
AMTR_s00155p00082980
Amborella trichopoda
AMTR_s00155p00082980
I
0.000
Aquca_030_00152
Aquilegia coerulea
Aquca_030_00152
I
0.000
ARF10
Arabidopsis thaliana
AT2G28350
I
0.000
ARF16
Arabidopsis thaliana
AT4G30080
D
0.000
BGIOSGA008657
Oryza indica
BGIOSGA008657
I
0.000
ARF10
Oryza indica
BGIOSGA016767
I
0.000
Bo1g014600
Brassica oleracea
Bo1g014600
I
0.000
Bo4g071620
Brassica oleracea
Bo4g071620
I
0.000
Bo7g114200
Brassica oleracea
Bo7g114200
I
0.000
Bostr.27991s0089
Boechera stricta
Bostr.27991s0089
I
0.000
Bostr.7867s0859
Boechera stricta
Bostr.7867s0859
I
0.000
Bra011162
Brassica rapa
Bra011162
I
0.000
Bra011955
Brassica rapa
Bra011955
I
0.000
Bra024109
Brassica rapa
Bra024109
I
0.000
BRADI1G33160
Brachypodium distachyon
BRADI1G33160
I
0.000
BRADI3G28950
Brachypodium distachyon
BRADI3G28950
I
0.000
BRADI3G49320
Brachypodium distachyon
BRADI3G49320
I
0.000
BRADI5G15904
Brachypodium distachyon
BRADI5G15904
I
0.000
Cagra.1744s0020
Capsella grandiflora
Cagra.1744s0020
I
0.000
Cagra.1876s0007
Capsella grandiflora
Cagra.1876s0007
I
0.000
Carubv10004220m.g
Capsella rubella
Carubv10004220m.g
I
0.000
Carubv10022755m.g
Capsella rubella
Carubv10022755m.g
I
0.000
cassava23558.valid.m1
Manihot esculenta
cassava23558.valid.m1
I
0.000
cassava36161.valid.m1
Manihot esculenta
cassava36161.valid.m1
I
0.000
cassava37879.valid.m1
Manihot esculenta
cassava37879.valid.m1
I
0.000
cassava5984.valid.m1
Manihot esculenta
cassava5984.valid.m1
I
0.000
cassava852.valid.m1
Manihot esculenta
cassava852.valid.m1
I
0.000
Ca_02541
Cicer arietinum
Ca_02541
I
0.000
Ca_08488
Cicer arietinum
Ca_08488
I
0.000
Ca_17136
Cicer arietinum
Ca_17136
I
0.000
Ca_26121
Cicer arietinum
Ca_26121
I
0.000
chr1.LjT31L11.90.nd
Lotus japonicus
chr1.LjT31L11.90.nd
I
0.000
chr3.LjT10E18.60.nc
Lotus japonicus
chr3.LjT10E18.60.nc
I
0.000
Ciclev10011194m.g
Citrus clementina
Ciclev10011194m.g
I
0.000
Ciclev10027901m.g
Citrus clementina
Ciclev10027901m.g
I
0.000
Ciclev10030860m.g
Citrus clementina
Ciclev10030860m.g
I
0.000
Cla008883
Citrullus lanatus
Cla008883
I
0.000
Cla013979
Citrullus lanatus
Cla013979
I
0.000
Cla018574
Citrullus lanatus
Cla018574
I
0.000
Cla022413
Citrullus lanatus
Cla022413
I
0.000
Cucsa.124410
Cucumis sativus
Cucsa.124410
I
0.000
Cucsa.137650
Cucumis sativus
Cucsa.137650
I
0.000
Cucsa.381330
Cucumis sativus
Cucsa.381330
I
0.000
Cucsa.386060
Cucumis sativus
Cucsa.386060
I
0.000
estExt_fgenesh1_pm.C_3390006
Physcomitrella patens
estExt_fgenesh1_pm.C_3390006
I
0.000
Eucgr.F04380
Eucalyptus grandis
Eucgr.F04380
I
0.000
Eucgr.G02838
Eucalyptus grandis
Eucgr.G02838
I
0.000
Eucgr.J00923
Eucalyptus grandis
Eucgr.J00923
I
0.000
Eucgr.K01240
Eucalyptus grandis
Eucgr.K01240
I
0.000
evm.TU.supercontig_49.122
Carica papaya
evm.TU.supercontig_49.122
I
0.000
evm.TU.supercontig_53.88
Carica papaya
evm.TU.supercontig_53.88
I
0.000
evm.TU.supercontig_65.4
Carica papaya
evm.TU.supercontig_65.4
I
0.000
e_gw1.279.55.1
Physcomitrella patens
e_gw1.279.55.1
I
0.000
F775_32978
Aegilops tauschii
F775_32978
I
0.000
ARF10
Arabidopsis lyrata
fgenesh2_kg.4__731__AT2G28350.1
I
0.000
gene02234-v1.0-hybrid
Fragaria vesca
gene02234-v1.0-hybrid
I
0.000
gene09733-v1.0-hybrid
Fragaria vesca
gene09733-v1.0-hybrid
I
0.000
gene16050-v1.0-hybrid
Fragaria vesca
gene16050-v1.0-hybrid
N
0.000
gene16844-v1.0-hybrid
Fragaria vesca
gene16844-v1.0-hybrid
I
0.000
gene23280-v1.0-hybrid
Fragaria vesca
gene23280-v1.0-hybrid
I
0.000
GLYMA04G43350
Glycine max
GLYMA04G43350
N
0.000
GLYMA10G06080
Glycine max
GLYMA10G06080
I
0.000
GLYMA10G35481
Glycine max
GLYMA10G35481
I
0.000
GLYMA11G20490
Glycine max
GLYMA11G20490
I
0.000
GLYMA12G08110
Glycine max
GLYMA12G08110
I
0.000
GLYMA12G29720
Glycine max
GLYMA12G29720
I
0.000
GLYMA13G20382
Glycine max
GLYMA13G20382
I
0.000
GLYMA13G40030
Glycine max
GLYMA13G40030
I
0.000
GLYMA19G36571
Glycine max
GLYMA19G36571
I
0.000
GLYMA20G32040
Glycine max
GLYMA20G32040
I
0.000
Gorai.003G142500
Gossypium raimondii
Gorai.003G142500
I
0.000
Gorai.006G166400
Gossypium raimondii
Gorai.006G166400
I
0.000
Gorai.009G107800
Gossypium raimondii
Gorai.009G107800
I
0.000
Gorai.009G241900
Gossypium raimondii
Gorai.009G241900
I
0.000
Gorai.010G046000
Gossypium raimondii
Gorai.010G046000
I
0.000
Gorai.011G238900
Gossypium raimondii
Gorai.011G238900
I
0.000
Gorai.012G004800
Gossypium raimondii
Gorai.012G004800
I
0.000
Gorai.013G267100
Gossypium raimondii
Gorai.013G267100
I
0.000
GRMZM2G081406
Zea mays
GRMZM2G081406
I
0.000
GRMZM2G153233
Zea mays
GRMZM2G153233
I
0.000
GRMZM2G159399
Zea mays
GRMZM2G159399
I
0.000
GRMZM2G390641
Zea mays
GRMZM2G390641
I
0.000
GSMUA_Achr11G22870_001
Musa acuminata
GSMUA_Achr11G22870_001
I
0.000
GSMUA_Achr4G18240_001
Musa acuminata
GSMUA_Achr4G18240_001
I
0.000
GSMUA_Achr8G18930_001
Musa acuminata
GSMUA_Achr8G18930_001
I
0.000
GSMUA_Achr9G29480_001
Musa acuminata
GSMUA_Achr9G29480_001
I
0.000
LjSGA_045968.2
Lotus japonicus
LjSGA_045968.2
I
0.000
LPERR02G20290
Leersia perrieri
LPERR02G20290
I
0.000
LPERR04G15300
Leersia perrieri
LPERR04G15300
I
0.000
LPERR06G21020
Leersia perrieri
LPERR06G21020
I
0.000
LPERR10G09970
Leersia perrieri
LPERR10G09970
I
0.000
Lus10009770.g
Linum usitatissimum
Lus10009770.g
N
0.000
Lus10016091.g
Linum usitatissimum
Lus10016091.g
I
0.000
Lus10019940.g
Linum usitatissimum
Lus10019940.g
I
0.000
Lus10021467.g
Linum usitatissimum
Lus10021467.g
I
0.000
Lus10023519.g
Linum usitatissimum
Lus10023519.g
I
0.000
Lus10024753.g
Linum usitatissimum
Lus10024753.g
N
0.000
Lus10026510.g
Linum usitatissimum
Lus10026510.g
I
0.000
Lus10040403.g
Linum usitatissimum
Lus10040403.g
I
0.000
MDP0000131481
Malus domestica
MDP0000131481
I
0.000
MDP0000221322
Malus domestica
MDP0000221322
I
0.000
MDP0000256621
Malus domestica
MDP0000256621
I
0.000
MDP0000750392
Malus domestica
MDP0000750392
I
0.000
mgf000336m
Mimulus guttatus
mgf000336m
I
0.000
mgf005300m
Mimulus guttatus
mgf005300m
I
0.000
mgf016139m
Mimulus guttatus
mgf016139m
I
0.000
mgf024607m
Mimulus guttatus
mgf024607m
I
0.000
MLOC_64795
Hordeum vulgare
MLOC_64795
I
0.000
MLOC_77438
Hordeum vulgare
MLOC_77438
I
0.000
MTR_0041s0110
Medicago truncatula
MTR_0041s0110
I
0.000
MTR_1g064430
Medicago truncatula
MTR_1g064430
I
0.000
MTR_1g094960
Medicago truncatula
MTR_1g094960
I
0.000
MTR_2g094570
Medicago truncatula
MTR_2g094570
I
0.000
MTR_4g058930
Medicago truncatula
MTR_4g058930
I
0.000
MTR_7g101275
Medicago truncatula
MTR_7g101275
I
0.000
MTR_7g101280
Medicago truncatula
MTR_7g101280
I
0.000
OB02G32150
Oryza brachyantha
OB02G32150
I
0.000
OB04G25990
Oryza brachyantha
OB04G25990
I
0.000
OB06G32920
Oryza brachyantha
OB06G32920
I
0.000
OB09G15010
Oryza brachyantha
OB09G15010
N
0.000
OB10G20590
Oryza brachyantha
OB10G20590
I
0.000
OBART02G24860
Oryza barthii
OBART02G24860
I
0.000
OBART04G18910
Oryza barthii
OBART04G18910
I
0.000
OBART06G25230
Oryza barthii
OBART06G25230
I
0.000
OBART10G13410
Oryza barthii
OBART10G13410
I
0.000
OGLUM01G18360
Oryza glumaepatula
OGLUM01G18360
I
0.000
OGLUM02G25270
Oryza glumaepatula
OGLUM02G25270
I
0.000
OGLUM06G26560
Oryza glumaepatula
OGLUM06G26560
I
0.000
OGLUM10G13220
Oryza glumaepatula
OGLUM10G13220
I
0.000
OLONG_000617
Oryza longistaminata
OLONG_000617
I
0.000
OLONG_021130
Oryza longistaminata
OLONG_021130
I
0.000
OMERI02G24320
Oryza meridionalis
OMERI02G24320
I
0.000
OMERI04G15770
Oryza meridionalis
OMERI04G15770
I
0.000
OMERI06G25370
Oryza meridionalis
OMERI06G25370
I
0.000
OMERI10G10210
Oryza meridionalis
OMERI10G10210
I
0.000
ONIVA02G27180
Oryza nivara
ONIVA02G27180
I
0.000
ONIVA06G28270
Oryza nivara
ONIVA06G28270
I
0.000
ONIVA06G31350
Oryza nivara
ONIVA06G31350
I
0.000
ONIVA10G14700
Oryza nivara
ONIVA10G14700
I
0.000
OPUNC02G22610
Oryza punctata
OPUNC02G22610
I
0.000
OPUNC04G16630
Oryza punctata
OPUNC04G16630
I
0.000
OPUNC06G22960
Oryza punctata
OPUNC06G22960
I
0.000
OPUNC10G11840
Oryza punctata
OPUNC10G11840
I
0.000
orange1.1g004896m.g
Citrus sinensis
orange1.1g004896m.g
I
0.000
orange1.1g005075m.g
Citrus sinensis
orange1.1g005075m.g
I
0.000
orange1.1g005482m.g
Citrus sinensis
orange1.1g005482m.g
I
0.000
ORGLA02G0215100
Oryza glaberrima
ORGLA02G0215100
I
0.000
ORGLA04G0160200
Oryza glaberrima
ORGLA04G0160200
I
0.000
ORGLA06G0209500
Oryza glaberrima
ORGLA06G0209500
I
0.000
ORGLA10G0115500
Oryza glaberrima
ORGLA10G0115500
I
0.000
ORUFI02G26180
Oryza rufipogon
ORUFI02G26180
I
0.000
ORUFI04G20430
Oryza rufipogon
ORUFI04G20430
I
0.000
ORUFI06G27120
Oryza rufipogon
ORUFI06G27120
I
0.000
ORUFI10G14150
Oryza rufipogon
ORUFI10G14150
I
0.000
ARF8
Oryza sativa
OS02G0628600
I
0.000
OS04G0519700
Oryza sativa
OS04G0519700
I
0.000
ARF18
Oryza sativa
OS06G0685700
I
0.000
ARF22
Oryza sativa
OS10G0479900
I
0.000
Pavir.Da00107
Panicum virgatum
Pavir.Da00107
I
0.000
Pavir.Gb00635
Panicum virgatum
Pavir.Gb00635
I
0.000
Pavir.Ia01695
Panicum virgatum
Pavir.Ia01695
I
0.000
Pavir.J03524
Panicum virgatum
Pavir.J03524
I
0.000
Pavir.J24081
Panicum virgatum
Pavir.J24081
I
0.000
Pavir.J26437
Panicum virgatum
Pavir.J26437
I
0.000
Pavir.J37640
Panicum virgatum
Pavir.J37640
I
0.000
PDK_20s1359671g001
Phoenix dactylifera
PDK_20s1359671g001
I
0.000
PGSC0003DMG400008081
Solanum tuberosum
PGSC0003DMG400008081
I
0.000
PGSC0003DMG400021560
Solanum tuberosum
PGSC0003DMG400021560
I
0.000
PGSC0003DMG400024320
Solanum tuberosum
PGSC0003DMG400024320
I
0.000
PK10136.1
Cannabis sativa
PK10136.1
I
0.000
PK13064.1
Cannabis sativa
PK13064.1
I
0.000
PK13393.1
Cannabis sativa
PK13393.1
I
0.000
PK17007.1
Cannabis sativa
PK17007.1
I
0.000
Pm018533
Prunus mume
Pm018533
I
0.000
Pm019126
Prunus mume
Pm019126
I
0.000
Pm030120
Prunus mume
Pm030120
I
0.000
Pm031275
Prunus mume
Pm031275
I
0.000
POPTR_0002s09050
Populus trichocarpa
POPTR_0002s09050
I
0.000
POPTR_0004s22130
Populus trichocarpa
POPTR_0004s22130
I
0.000
POPTR_0005s16320
Populus trichocarpa
POPTR_0005s16320
I
0.000
POPTR_0006s12930
Populus trichocarpa
POPTR_0006s12930
I
0.000
POPTR_0008s03890
Populus trichocarpa
POPTR_0008s03890
I
0.000
POPTR_0010s23000
Populus trichocarpa
POPTR_0010s23000
I
0.000
POPTR_0016s09150
Populus trichocarpa
POPTR_0016s09150
I
0.000
POPTR_0848s00200
Populus trichocarpa
POPTR_0848s00200
I
0.000
PRUPE_ppa002082mg
Prunus persica
PRUPE_ppa002082mg
I
0.000
PRUPE_ppa002195mg
Prunus persica
PRUPE_ppa002195mg
I
0.000
PRUPE_ppa002710mg
Prunus persica
PRUPE_ppa002710mg
I
0.000
PRUPE_ppa003136mg
Prunus persica
PRUPE_ppa003136mg
I
0.000
SapurV1A.0010s0540
Salix purpurea
SapurV1A.0010s0540
I
0.000
SapurV1A.0049s0400
Salix purpurea
SapurV1A.0049s0400
I
0.000
SapurV1A.0141s0090
Salix purpurea
SapurV1A.0141s0090
I
0.000
SapurV1A.0216s0160
Salix purpurea
SapurV1A.0216s0160
I
0.000
SapurV1A.0331s0130
Salix purpurea
SapurV1A.0331s0130
I
0.000
SapurV1A.0518s0120
Salix purpurea
SapurV1A.0518s0120
I
0.000
SapurV1A.0657s0050
Salix purpurea
SapurV1A.0657s0050
I
0.000
SapurV1A.0986s0010
Salix purpurea
SapurV1A.0986s0010
I
0.000
Sb01g019130
Sorghum bicolor
Sb01g019130
I
0.000
Sb04g026610
Sorghum bicolor
Sb04g026610
I
0.000
Sb10g027790
Sorghum bicolor
Sb10g027790
I
0.000
ARF16
Arabidopsis lyrata
scaffold_701217.1
I
0.000
SELMODRAFT_437622
Selaginella moellendorffii
SELMODRAFT_437622
I
0.000
SELMODRAFT_443304
Selaginella moellendorffii
SELMODRAFT_443304
I
0.000
SELMODRAFT_444549
Selaginella moellendorffii
SELMODRAFT_444549
I
0.000
SELMODRAFT_451564
Selaginella moellendorffii
SELMODRAFT_451564
I
0.000
Si005991m.g
Setaria italica
Si005991m.g
I
0.000
Si009541m.g
Setaria italica
Si009541m.g
I
0.000
Si016509m.g
Setaria italica
Si016509m.g
I
0.000
Si034525m.g
Setaria italica
Si034525m.g
I
0.000
Solyc06g075150.2
Solanum lycopersicum
Solyc06g075150.2
I
0.000
Solyc09g007810.2
Solanum lycopersicum
Solyc09g007810.2
I
0.000
Solyc10g086130.1
Solanum lycopersicum
Solyc10g086130.1
I
0.000
Solyc11g069500.1
Solanum lycopersicum
Solyc11g069500.1
I
0.000
TCM_022163
Theobroma cacao
TCM_022163
I
0.000
TCM_029792
Theobroma cacao
TCM_029792
I
0.000
TCM_035002
Theobroma cacao
TCM_035002
I
0.000
TCM_042067
Theobroma cacao
TCM_042067
I
0.000
TCM_043157
Theobroma cacao
TCM_043157
I
0.000
Thhalv10016329m.g
Eutrema salsugineum
Thhalv10016329m.g
I
0.000
Thhalv10024601m.g
Eutrema salsugineum
Thhalv10024601m.g
I
0.000
Traes_2BL_A1A475B0F
Triticum aestivum
Traes_2BL_A1A475B0F
I
0.000
Traes_6DL_52A25BEA4
Triticum aestivum
Traes_6DL_52A25BEA4
I
0.000
ARF10
Vitis vinifera
VIT_06s0004g02750
I
0.000
VIT_08s0040g01810
Vitis vinifera
VIT_08s0040g01810
I
0.000
ARF16
Vitis vinifera
VIT_13s0019g04380
I
0.000