chr1.CM0050.50.nc (Lotus japonicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 chr1.CM0050.50.nc T146048_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.870
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.798 0.891
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.870
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.870
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.870
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.804
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.775 0.696
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.775 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0050.50.nc C2H2 ZF 91 113
chr1.CM0050.50.nc C2H2 ZF 143 165

Links

Other C2H2 ZF family TFs
Other Lotus japonicus TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28152.m000908 Ricinus communis 28152.m000908 I 0.788
29661.m000908 Ricinus communis 29661.m000908 I 0.761
30147.m014242 Ricinus communis 30147.m014242 I 0.760
30170.m013751 Ricinus communis 30170.m013751 I 0.796
AC211702.2_FG002 Zea mays AC211702.2_FG002 I 0.768
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.814
ZAT10 Arabidopsis thaliana AT1G27730 D 0.796
ZAT4 Arabidopsis thaliana AT2G45120 D 0.775
AZF2 Arabidopsis thaliana AT3G19580 D 0.798
ZAT9 Arabidopsis thaliana AT3G60580 D 0.775
ZAT6 Arabidopsis thaliana AT5G04340 D 0.803
AZF3 Arabidopsis thaliana AT5G43170 I 0.792
AZF1 Arabidopsis thaliana AT5G67450 D 0.787
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.758
Bo1g081350 Brassica oleracea Bo1g081350 I 0.792
Bo1g113530 Brassica oleracea Bo1g113530 I 0.803
Bo2g168030 Brassica oleracea Bo2g168030 I 0.787
Bo3g037560 Brassica oleracea Bo3g037560 I 0.799
Bo3g142840 Brassica oleracea Bo3g142840 I 0.796
Bo4g195370 Brassica oleracea Bo4g195370 I 0.799
Bo5g052290 Brassica oleracea Bo5g052290 I 0.778
Bo5g113850 Brassica oleracea Bo5g113850 I 0.803
Bo7g048650 Brassica oleracea Bo7g048650 I 0.802
Bo7g065200 Brassica oleracea Bo7g065200 I 0.798
Bo9g019120 Brassica oleracea Bo9g019120 I 0.787
Bo9g181170 Brassica oleracea Bo9g181170 I 0.803
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.775
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.802
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.803
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.803
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.775
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.793
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.803
Bra000372 Brassica rapa Bra000372 I 0.799
Bra009464 Brassica rapa Bra009464 I 0.803
Bra010922 Brassica rapa Bra010922 I 0.796
Bra012914 Brassica rapa Bra012914 I 0.792
Bra018817 Brassica rapa Bra018817 I 0.788
Bra022436 Brassica rapa Bra022436 I 0.803
Bra029985 Brassica rapa Bra029985 I 0.792
Bra031834 Brassica rapa Bra031834 I 0.787
Bra032845 Brassica rapa Bra032845 I 0.778
Bra033666 Brassica rapa Bra033666 I 0.798
Bra037845 Brassica rapa Bra037845 I 0.787
Bra038219 Brassica rapa Bra038219 I 0.803
Bra040325 Brassica rapa Bra040325 I 0.799
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.773
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.782
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.758
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.775
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.775
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.803
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.798
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.798
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.803
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.775
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.775
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.788
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.759
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.784
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.803
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.788
Ca_01586 Cicer arietinum Ca_01586 I 0.803
Ca_05641 Cicer arietinum Ca_05641 I 0.774
Ca_18364 Cicer arietinum Ca_18364 I 0.803
Ca_23672 Cicer arietinum Ca_23672 I 0.769
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.827
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.803
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.803
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.803
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.760
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.769
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.803
Cla001400 Citrullus lanatus Cla001400 I 0.764
Cla022966 Citrullus lanatus Cla022966 I 0.761
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.788
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.827
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.761
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.774
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.803
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.769
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.779
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.787
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.764
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.796
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.803
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.775
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.803
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.769
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.769
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.769
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.803
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.803
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.774
GLYMA11G15140 Glycine max GLYMA11G15140 I 0.768
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.803
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.803
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.769
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.794
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.770
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.803
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.803
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.794
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.803
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.779
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.800
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.763
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.758
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.763
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.769
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.759
MDP0000198015 Malus domestica MDP0000198015 I 0.803
MDP0000319225 Malus domestica MDP0000319225 I 0.803
MDP0000573176 Malus domestica MDP0000573176 I 0.803
MDP0000762756 Malus domestica MDP0000762756 I 0.803
mgf006006m Mimulus guttatus mgf006006m I 0.787
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.764
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.768
MLOC_70662 Hordeum vulgare MLOC_70662 I 0.776
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.769
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.802
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.803
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.803
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.775
OB03G31780 Oryza brachyantha OB03G31780 I 0.758
OB03G42170 Oryza brachyantha OB03G42170 I 0.784
OBART03G22570 Oryza barthii OBART03G22570 I 0.758
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.758
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.758
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.768
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.803
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.803
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.769
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.758
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.758
OS03G0437200 Oryza sativa OS03G0437200 I 0.758
OS12G0583700 Oryza sativa OS12G0583700 I 0.768
Pavir.J15304 Panicum virgatum Pavir.J15304 N 0.762
Pavir.J16973 Panicum virgatum Pavir.J16973 N 0.762
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.788
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.794
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.769
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.773
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.782
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.788
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.759
PK10188.1 Cannabis sativa PK10188.1 I 0.803
Pm005390 Prunus mume Pm005390 I 0.803
Pm021284 Prunus mume Pm021284 I 0.803
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.760
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.802
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.769
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.798
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.803
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.803
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.794
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.798
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.798
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.768
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.769
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.803
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.759
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.759
Sb02g038000 Sorghum bicolor Sb02g038000 N 0.762
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.775
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.803
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.792
Si023013m.g Setaria italica Si023013m.g I 0.768
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.769
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.764
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.787
TCM_000780 Theobroma cacao TCM_000780 I 0.796
TCM_007214 Theobroma cacao TCM_007214 I 0.803
TCM_034720 Theobroma cacao TCM_034720 I 0.803
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.799
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.792
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.803
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.803
Traes_2BS_DD07C2EE6 Triticum aestivum Traes_2BS_DD07C2EE6 N 0.762
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.773
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.797
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.802
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.769
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.803