Carubv10026289m.g (Capsella rubella)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Carubv10026289m.g T202371_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026289m GRAS 119 490

Links

Other GRAS family TFs
Other Capsella rubella TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27613.m000642 Ricinus communis 27613.m000642 N 0.770
29949.m000124 Ricinus communis 29949.m000124 N 0.824
AMTR_s00088p00161000 Amborella trichopoda AMTR_s00088p00161000 N 0.740
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.772
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.745
SCL5 Arabidopsis thaliana AT1G50600 N 0.710
SCL21 Arabidopsis thaliana AT2G04890 N 0.732
PAT1 Arabidopsis thaliana AT5G48150 N 0.984
Bo2g149670 Brassica oleracea Bo2g149670 N 0.951
Bo6g022330 Brassica oleracea Bo6g022330 N 0.710
Bo7g030310 Brassica oleracea Bo7g030310 N 0.715
Bo7g089080 Brassica oleracea Bo7g089080 N 0.927
Bo9g009260 Brassica oleracea Bo9g009260 N 0.938
Bostr.19424s0023 Boechera stricta Bostr.19424s0023 N 0.745
Bostr.26675s0117 Boechera stricta Bostr.26675s0117 N 0.705
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.981
Bra015156 Brassica rapa Bra015156 N 0.730
Bra018860 Brassica rapa Bra018860 N 0.710
Bra020715 Brassica rapa Bra020715 N 0.946
Bra026077 Brassica rapa Bra026077 N 0.726
Bra036185 Brassica rapa Bra036185 N 0.930
Bra037509 Brassica rapa Bra037509 N 0.902
Cagra.1158s0007 Capsella grandiflora Cagra.1158s0007 N 0.731
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 1.000
Carubv10015685m.g Capsella rubella Carubv10015685m.g N 0.721
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.783
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.810
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.764
cassava8885.m1 Manihot esculenta cassava8885.m1 N 0.740
Ca_09786 Cicer arietinum Ca_09786 N 0.813
Ca_13855 Cicer arietinum Ca_13855 N 0.702
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.732
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.789
Cla001429 Citrullus lanatus Cla001429 N 0.797
Cla004565 Citrullus lanatus Cla004565 N 0.707
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.805
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.802
Eucgr.F03523 Eucalyptus grandis Eucgr.F03523 N 0.713
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N 0.713
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.848
SCL5 Arabidopsis lyrata fgenesh2_kg.1__4145__AT1G50600.1 N 0.710
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.743
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.824
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.813
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.818
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.827
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.745
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.816
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N 0.740
GSMUA_Achr8G03610_001 Musa acuminata GSMUA_Achr8G03610_001 N 0.715
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.734
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.764
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.770
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.765
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.751
MDP0000152670 Malus domestica MDP0000152670 N 0.813
MDP0000205236 Malus domestica MDP0000205236 N 0.729
MDP0000284679 Malus domestica MDP0000284679 N 0.729
MDP0000804652 Malus domestica MDP0000804652 N 0.816
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.813
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.789
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.724
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.810
PGSC0003DMG400022187 Solanum tuberosum PGSC0003DMG400022187 N 0.734
PK09018.1 Cannabis sativa PK09018.1 N 0.789
PK15082.1 Cannabis sativa PK15082.1 N 0.718
Pm012019 Prunus mume Pm012019 N 0.753
Pm015021 Prunus mume Pm015021 N 0.827
SCL5 Populus trichocarpa POPTR_0001s37270 N 0.759
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.835
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.829
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.732
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N 0.756
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.835
SCL21 Arabidopsis lyrata scaffold_303269.1 N 0.739
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.967
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.810
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N 0.743
TCM_002319 Theobroma cacao TCM_002319 N 0.827
TCM_030733 Theobroma cacao TCM_030733 N 0.764
Thhalv10002541m.g Eutrema salsugineum Thhalv10002541m.g N 0.732
Thhalv10004053m.g Eutrema salsugineum Thhalv10004053m.g N 0.930
Thhalv10011379m.g Eutrema salsugineum Thhalv10011379m.g N 0.713
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.827
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.759