rfx5 (Tetraodon nigroviridis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSTNIG00000005388 T318534_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.743 0.772
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.743 0.772
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.743 0.772
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.743 0.772
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.743 0.772
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.743 0.772
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.743 0.772
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.743 0.772
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.743 0.772
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.743 0.772
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.743 0.772
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.743 0.772
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.743 0.772
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.743 0.772
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.743 0.772
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.718 0.646
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.718 0.646
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.718 0.646
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.718 0.646
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000008071 RFX 72 150

Links

Other RFX family TFs
Other Tetraodon nigroviridis TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013752 Aedes aegypti AAEL013752 I 0.678
AALB008384 Anopheles albimanus AALB008384 I 0.680
Aan_R010941 Calypte anna Aan_R010941 I 0.752
Aan_R011989 Calypte anna Aan_R011989 I 0.712
AARA004226 Anopheles arabiensis AARA004226 I 0.680
AATE016751 Anopheles atroparvus AATE016751 I 0.680
ACEP24602 Atta cephalotes ACEP24602 I 0.686
ACHR008891 Anopheles christyi ACHR008891 I 0.680
ACOM036649 Anopheles coluzzii ACOM036649 I 0.680
ACRE_029400 Acremonium chrysogenum ACRE_029400 I 0.653
ACUA017169 Anopheles culicifacies ACUA017169 I 0.680
ACYPI002124 Acyrthosiphon pisum ACYPI002124 I 0.651
ADAC008404 Anopheles darlingi ADAC008404 I 0.680
ADIR010232 Anopheles dirus ADIR010232 I 0.680
AEPI006624 Anopheles epiroticus AEPI006624 I 0.680
AFAF011654 Anopheles farauti AFAF011654 I 0.680
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.762
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.712
AFUN011072 Anopheles funestus AFUN011072 I 0.680
AGAP013226 Anopheles gambiae AGAP013226 I 0.680
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.704
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.758
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.654
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.654
AMEC002251 Anopheles melas AMEC002251 I 0.680
AMEM009524 Anopheles merus AMEM009524 I 0.680
AMIN003942 Anopheles minimus AMIN003942 I 0.680
Aqu1.223491 Amphimedon queenslandica Aqu1.223491 I 0.652
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.680
ASIS020285 Anopheles sinensis ASIS020285 I 0.680
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.680
A_01977 Schistosoma haematobium A_01977 I 0.699
BDDG_02784 Blastomyces dermatitidis BDDG_02784 I 0.652
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.670
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.704
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.652
CapteG131555 Capitella teleta CapteG131555 I 0.695
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.670
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.686
CLEC011984 Cimex lectularius CLEC011984 I 0.677
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.691
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.656
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.677
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.677
csin102559 Clonorchis sinensis csin102559 I 0.710
D915_00887 Fasciola hepatica D915_00887 I 0.658
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.689
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.698
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.657
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.698
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.718
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.752
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.754
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.718
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.789
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.722
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.722
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.688
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.718
RFX7 Bos taurus ENSBTAG00000000565 I 0.718
RFX5 Bos taurus ENSBTAG00000017580 I 0.743
RFX5 Canis familiaris ENSCAFG00000012661 I 0.743
RFX7 Canis familiaris ENSCAFG00000016029 I 0.718
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.718
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.739
RFX7 Callithrix jacchus ENSCJAG00000002163 I 0.651
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.743
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.718
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.743
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.743
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.718
rfx5 Danio rerio ENSDARG00000063258 I 0.789
rfx7 Danio rerio ENSDARG00000077237 I 0.717
RFX7 Danio rerio ENSDARG00000103691 I 0.722
RFX5 Dasypus novemcinctus ENSDNOG00000035113 I 0.671
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.718
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.743
RFX7 Equus caballus ENSECAG00000002379 I 0.712
RFX5 Equus caballus ENSECAG00000024774 I 0.743
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.738
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.704
RFX5 Echinops telfairi ENSETEG00000013503 I 0.743
RFX7 Echinops telfairi ENSETEG00000015037 I 0.701
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.763
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.718
RFX5 Felis catus ENSFCAG00000005568 I 0.743
RFX7 Felis catus ENSFCAG00000029408 I 0.712
RFX5 Homo sapiens ENSG00000143390 D 0.743
RFX7 Homo sapiens ENSG00000181827 D 0.718
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.722
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.713
RFX5 Gallus gallus ENSGALG00000000836 I 0.765
RFX7 Gorilla gorilla ENSGGOG00000002118 I 0.651
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.743
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.718
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.722
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.718
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.718
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.743
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.792
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.723
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.662
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.744
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.760
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.718
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.754
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.713
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.743
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.712
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.712
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.718
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.669
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.718
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.743
Rfx5 Mus musculus ENSMUSG00000005774 I 0.742
Rfx7 Mus musculus ENSMUSG00000037674 D 0.718
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.718
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.743
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.718
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.714
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.743
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.743
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.718
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.743
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.714
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.792
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.703
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.722
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.663
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.781
RFX7 Oryzias latipes ENSORLG00000005342 I 0.722
rfx7 Oryzias latipes ENSORLG00000008583 I 0.708
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.743
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.743
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.713
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.743
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.718
RFX7 Procavia capensis ENSPCAG00000004974 I 0.718
RFX5 Procavia capensis ENSPCAG00000011056 I 0.759
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.703
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.794
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.720
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.743
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.718
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.718
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.752
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.743
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.718
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.716
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.743
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.742
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.718
RFX5 Sorex araneus ENSSARG00000000750 I 0.743
RFX7 Sorex araneus ENSSARG00000010801 I 0.712
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.718
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.744
RFX5 Sus scrofa ENSSSCG00000006625 I 0.743
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.663
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.745
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.743
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.653
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.712
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.698
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.716
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.796
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.716
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.699
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.718
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.668
ENSTSYG00000008562 Tarsius syrichta ENSTSYG00000008562 I 0.650
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.743
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.719
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.718
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.703
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.722
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.794
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.709
CG9727 Drosophila melanogaster FBgn0037445 I 0.681
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.681
GF16654 Drosophila ananassae FBgn0093675 I 0.680
GG10435 Drosophila erecta FBgn0102744 I 0.681
GH18082 Drosophila grimshawi FBgn0125550 I 0.681
GI24583 Drosophila mojavensis FBgn0147305 I 0.681
GL22063 Drosophila persimilis FBgn0159655 I 0.681
GM10553 Drosophila sechellia FBgn0165499 I 0.681
GD19544 Drosophila simulans FBgn0191039 I 0.681
GJ22650 Drosophila virilis FBgn0209754 I 0.681
GK13786 Drosophila willistoni FBgn0215794 I 0.681
GE24099 Drosophila yakuba FBgn0241238 I 0.681
fgenesh2_pg.scaffold_3000303 Monosiga brevicollis fgenesh2_pg.scaffold_3000303 I 0.656
GB49419 Apis mellifera GB49419 I 0.686
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.763
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.712
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.698
HMEL011744 Heliconius melpomene HMEL011744 I 0.682
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.698
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.700
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.686
ISCW001129 Ixodes scapularis ISCW001129 I 0.665
KAFR_0H03130 Kazachstania africana KAFR_0H03130 I 0.651
KGM_16732 Danaus plexippus KGM_16732 I 0.681
L798_03377 Zootermopsis nevadensis L798_03377 I 0.683
LCUP014592 Lucilia cuprina LCUP014592 I 0.682
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.693
LotgiG138119 Lottia gigantea LotgiG138119 I 0.691
MCINX003210 Melitaea cinxia MCINX003210 I 0.681
MDOA009335 Musca domestica MDOA009335 I 0.682
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.754
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.710
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.697
NV23037 Nasonia vitripennis NV23037 I 0.683
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.711
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.664
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.743
PHUM035280 Pediculus humanus PHUM035280 I 0.689
PTSG_12063 Salpingoeca rosetta PTSG_12063 I 0.653
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.751
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.710
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.658
SINV24627 Solenopsis invicta SINV24627 I 0.686
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.689
Smp_040350 Schistosoma mansoni Smp_040350 I 0.699
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.709
sak1 Schizosaccharomyces pombe SPAC3G9.14 I 0.652
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.708
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.689
T265_11740 Opisthorchis viverrini T265_11740 I 0.710
TC008959 Tribolium castaneum TC008959 I 0.690
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.677
TriadG51266 Trichoplax adhaerens TriadG51266 I 0.650
TriadG51992 Trichoplax adhaerens TriadG51992 I 0.651
TsM_000553100 Taenia solium TsM_000553100 I 0.699
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.699
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.717
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.766
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.752
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.679