Hmg20b (Rattus norvegicus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSRNOG00000020601 T329044_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.741 1.000
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000028002 Sox 70 138
ENSRNOP00000074794 Sox 70 138

Links

Other Sox family TFs
Other Rattus norvegicus TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011684 Calypte anna Aan_R011684 I 0.709
Aan_R011791 Calypte anna Aan_R011791 I 0.555
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I 0.422
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.555
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.709
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.709
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.555
BGIBMGA005325 Bombyx mori BGIBMGA005325 I 0.426
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.555
CapteG155070 Capitella teleta CapteG155070 I 0.475
CapteG191691 Capitella teleta CapteG191691 I 0.449
CGI_10028818 Crassostrea gigas CGI_10028818 I 0.423
CLEC002862 Cimex lectularius CLEC002862 I 0.463
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.709
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.466
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I 0.555
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.555
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.714
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.563
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.587
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.595
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.694
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.709
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.555
HMG20A Bos taurus ENSBTAG00000020441 I 0.563
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.714
HMG20A Canis familiaris ENSCAFG00000018061 I 0.563
HMG20B Canis familiaris ENSCAFG00000019215 I 0.714
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.563
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.706
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.563
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.714
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.563
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.557
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.714
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.563
hmg20a Danio rerio ENSDARG00000031198 I 0.617
hmg20b Danio rerio ENSDARG00000042045 I 0.694
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.563
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.563
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.707
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.563
HMG20A Echinops telfairi ENSETEG00000015812 I 0.563
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.555
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.709
HMG20A Felis catus ENSFCAG00000022539 I 0.563
HMG20B Felis catus ENSFCAG00000026167 I 0.714
HMG20B Homo sapiens ENSG00000064961 I 0.714
HMG20A Homo sapiens ENSG00000140382 I 0.563
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.595
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.653
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.555
HMG20B Gallus gallus ENSGALG00000027838 I 0.709
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.563
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.714
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.649
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.595
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.632
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.540
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.714
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.563
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.566
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.624
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.709
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.563
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.709
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.555
HMG20A Microcebus murinus ENSMICG00000011025 I 0.563
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.563
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.714
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.563
ENSMMUG00000028932 Macaca mulatta ENSMMUG00000028932 I 0.539
ENSMMUP00000031974 Macaca fascicularis ENSMMUP00000031974 I 0.539
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.709
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.563
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.714
ENSMPUG00000007386 Mustela putorius furo ENSMPUG00000007386 I 0.462
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.563
Hmg20b Mus musculus ENSMUSG00000020232 D 0.741
Hmg20a Mus musculus ENSMUSG00000032329 I 0.563
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.563
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.563
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.709
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.563
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.605
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.714
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.563
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.563
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.714
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.653
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.595
HMG20A Ochotona princeps ENSOPRG00000011000 I 0.423
hmg20a Oryzias latipes ENSORLG00000001794 I 0.595
hmg20b Oryzias latipes ENSORLG00000004640 I 0.653
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.563
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.563
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.714
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.563
HMG20B Procavia capensis ENSPCAG00000010772 I 0.714
HMG20A Procavia capensis ENSPCAG00000013879 I 0.563
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.653
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.595
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.563
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.714
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.709
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.555
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.563
HMG20B Pan troglodytes ENSPTRG00000010268 I 0.478
HMG20B Pteropus vampyrus ENSPVAG00000004300 I 0.533
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.563
HMG20A Sorex araneus ENSSARG00000012609 I 0.523
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.709
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.563
HMG20A Sus scrofa ENSSSCG00000001871 I 0.563
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.563
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.563
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.714
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.563
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.709
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.555
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.595
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.653
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.595
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.653
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.563
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.563
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.714
HMG20A Vicugna pacos ENSVPAG00000010013 I 0.563
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.595
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.653
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.508
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.626
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.626
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.508
GB41600 Apis mellifera GB41600 I 0.421
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.524
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.709
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.455
HMEL017569 Heliconius melpomene HMEL017569 I 0.426
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I 0.453
L798_15457 Zootermopsis nevadensis L798_15457 I 0.475
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.421
LotgiG196090 Lottia gigantea LotgiG196090 I 0.474
LotgiG231408 Lottia gigantea LotgiG231408 I 0.415
MCINX003064 Melitaea cinxia MCINX003064 I 0.445
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.563
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.714
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.598
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.595
NV11068 Nasonia vitripennis NV11068 I 0.453
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.493
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.555
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.709
RPRC008043 Rhodnius prolixus RPRC008043 I 0.424
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.442
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.551
SMAR000790 Strigamia maritima SMAR000790 I 0.557
SMAR002604 Strigamia maritima SMAR002604 I 0.468
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.575
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.575
Tal_R006697 Tyto alba Tal_R006697 I 0.555
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.560
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.703
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.703
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.703
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.626
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.626
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.549
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.549
YQE_10385 Dendroctonus ponderosae YQE_10385 I 0.436