Pm019399 (Prunus mume)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pm019399 T344562_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.969 0.763
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.968 0.763
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.967 0.688
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.967 0.806
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.965 0.753
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.965 0.753
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.964 0.774
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.964 0.774
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.964 0.774
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.962 0.624
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.962 0.613
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.962 0.613
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.962 0.613
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.962 0.613
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.961 0.667
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.960 0.753
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.958 0.645
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.957 0.645
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.957 0.645
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.957 0.645
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.957 0.645
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.953 0.634
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.953 0.656
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.952 0.624
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.952 0.634
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.942 0.645
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.941 0.634
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.941 0.634
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.930 0.570
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.930 0.570
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.930 0.570
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.929 0.559
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.928 0.548
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.872 0.484
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.872 0.484
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm019399 TCP 88 205

Links

Other TCP family TFs
Other Prunus mume TFs

657 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00017p00206510 Amborella trichopoda AMTR_s00017p00206510 N
AMTR_s00041p00167350 Amborella trichopoda AMTR_s00041p00167350 N
AZW_EuGene.0000110131 Micromonas pusilla AZW_EuGene.0000110131 N
BGIOSGA007226 Oryza indica BGIOSGA007226 N
BGIOSGA027713 Oryza indica BGIOSGA027713 N
Bo1g006000 Brassica oleracea Bo1g006000 N
Bo4g145670 Brassica oleracea Bo4g145670 I
Bo7g049880 Brassica oleracea Bo7g049880 I
Bo7g117730 Brassica oleracea Bo7g117730 N
Bo8g102040 Brassica oleracea Bo8g102040 I
Bostr.18351s0255 Boechera stricta Bostr.18351s0255 N
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I
Bostr.7867s1467 Boechera stricta Bostr.7867s1467 N
Bra017742 Brassica rapa Bra017742 N
Bra030325 Brassica rapa Bra030325 I
Bra031159 Brassica rapa Bra031159 I
BRADI1G02640 Brachypodium distachyon BRADI1G02640 N
BRADI1G02650 Brachypodium distachyon BRADI1G02650 N
BRADI2G07090 Brachypodium distachyon BRADI2G07090 N
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N
Ca_11038 Cicer arietinum Ca_11038 N
chr3.CM0112.180.nd Lotus japonicus chr3.CM0112.180.nd N
chr4.CM0119.380.nc Lotus japonicus chr4.CM0119.380.nc N
chr6.CM0045.280.nd Lotus japonicus chr6.CM0045.280.nd N
Cla016088 Citrullus lanatus Cla016088 N
Cucsa.381750 Cucumis sativus Cucsa.381750 N
estExt_fgenesh1_pg.C_10541 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_10541 N
estExt_fgeneshCV_pm.C_10002 Chlorella vulgaris estExt_fgeneshCV_pm.C_10002 N
estExt_gwp_gw1.C_410063 Physcomitrella patens estExt_gwp_gw1.C_410063 N
estExt_gwp_gw1.C_640002 Physcomitrella patens estExt_gwp_gw1.C_640002 N
EuGene.0200010100 Micromonas sp RCC299 EuGene.0200010100 N
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N
evm.TU.supercontig_6.261 Carica papaya evm.TU.supercontig_6.261 N
e_gw1.1.536.1 Chlorella vulgaris e_gw1.1.536.1 N
fgenesh1_pg.1_#_433 Coccomyxa subellipsoidea C169 fgenesh1_pg.1_#_433 N
CSDP1 Arabidopsis lyrata fgenesh2_kg.7__465__AT4G36020.1 N
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N
gene26519-v1.0-hybrid Fragaria vesca gene26519-v1.0-hybrid N
GLYMA02G05335 Glycine max GLYMA02G05335 N
GLYMA04G00660 Glycine max GLYMA04G00660 N
GLYMA11G11290 Glycine max GLYMA11G11290 N
GLYMA12G03470 Glycine max GLYMA12G03470 N
GLYMA16G23695 Glycine max GLYMA16G23695 N
Gorai.002G003500 Gossypium raimondii Gorai.002G003500 N
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I
Gorai.008G062500 Gossypium raimondii Gorai.008G062500 N
GRMZM2G389768 Zea mays GRMZM2G389768 N
gw1.103.78.1 Physcomitrella patens gw1.103.78.1 N
LPERR02G01370 Leersia perrieri LPERR02G01370 N
LPERR08G02000 Leersia perrieri LPERR08G02000 N
Lus10005066.g Linum usitatissimum Lus10005066.g N
Lus10025058.g Linum usitatissimum Lus10025058.g N
Lus10027839.g Linum usitatissimum Lus10027839.g N
MDP0000121628 Malus domestica MDP0000121628 N
MDP0000155077 Malus domestica MDP0000155077 N
MDP0000198079 Malus domestica MDP0000198079 N
MDP0000202739 Malus domestica MDP0000202739 N
MDP0000225222 Malus domestica MDP0000225222 N
MDP0000292743 Malus domestica MDP0000292743 N
MDP0000632148 Malus domestica MDP0000632148 N
mgf001526m Mimulus guttatus mgf001526m N
mgf014458m Mimulus guttatus mgf014458m N
mgf015980m Mimulus guttatus mgf015980m I
OBART02G01600 Oryza barthii OBART02G01600 N
OGLUM02G01470 Oryza glumaepatula OGLUM02G01470 N
OGLUM08G01920 Oryza glumaepatula OGLUM08G01920 N
OMERI02G00930 Oryza meridionalis OMERI02G00930 N
OMERI08G01940 Oryza meridionalis OMERI08G01940 N
ONIVA02G01490 Oryza nivara ONIVA02G01490 N
ONIVA08G01720 Oryza nivara ONIVA08G01720 N
OPUNC02G01060 Oryza punctata OPUNC02G01060 N
ORGLA02G0014700 Oryza glaberrima ORGLA02G0014700 N
ORGLA08G0012100 Oryza glaberrima ORGLA08G0012100 N
ORUFI02G01580 Oryza rufipogon ORUFI02G01580 N
ORUFI08G02050 Oryza rufipogon ORUFI08G02050 N
OS02G0121100 Oryza sativa OS02G0121100 N
OS08G0129200 Oryza sativa OS08G0129200 N
Pavir.Ab00211 Panicum virgatum Pavir.Ab00211 N
Pavir.J33226 Panicum virgatum Pavir.J33226 N
Pavir.J33349 Panicum virgatum Pavir.J33349 N
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N
PGSC0003DMG400001591 Solanum tuberosum PGSC0003DMG400001591 N
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I
PK01533.1 Cannabis sativa PK01533.1 N
PK03316.1 Cannabis sativa PK03316.1 N
Pm020837 Prunus mume Pm020837 I
Pm026767 Prunus mume Pm026767 N
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N
PRUPE_ppa010531mg Prunus persica PRUPE_ppa010531mg N
SapurV1A.0117s0150 Salix purpurea SapurV1A.0117s0150 N
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N
Sb04g001720 Sorghum bicolor Sb04g001720 N
SELMODRAFT_154869 Selaginella moellendorffii SELMODRAFT_154869 N
SELMODRAFT_186937 Selaginella moellendorffii SELMODRAFT_186937 N
SELMODRAFT_187582 Selaginella moellendorffii SELMODRAFT_187582 N
Solyc01g111300.2 Solanum lycopersicum Solyc01g111300.2 N
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I
Traes_6AS_539B381F1 Triticum aestivum Traes_6AS_539B381F1 N
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I
VIT_04s0023g03520 Vitis vinifera VIT_04s0023g03520 N