GLYMA20G26810 (Glycine max)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 GLYMA20G26810 T179493_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.875 0.875
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA20G26810.1 FAR1 48 135
GLYMA20G26810.2 FAR1 48 135

Links

Other FAR1 family TFs
Other Glycine max TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HMGB13 Arabidopsis thaliana AT4G11080 D
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I
Carubv10000930m.g Capsella rubella Carubv10000930m.g I
Carubv10007590m.g Capsella rubella Carubv10007590m.g I
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I
Lus10001909.g Linum usitatissimum Lus10001909.g I
Lus10003904.g Linum usitatissimum Lus10003904.g I
Lus10032379.g Linum usitatissimum Lus10032379.g I
MDP0000268093 Malus domestica MDP0000268093 I
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I
Pavir.J07596 Panicum virgatum Pavir.J07596 I
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I
PK10992.1 Cannabis sativa PK10992.1 I
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I
Bra013731 Brassica rapa Bra013731 I
Bra035256 Brassica rapa Bra035256 I
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I
GLYMA05G37010 Glycine max GLYMA05G37010 I
Bo1g037180 Brassica oleracea Bo1g037180 I
HMGB6 Arabidopsis thaliana AT4G23800 I
GRMZM2G060253 Zea mays GRMZM2G060253 I
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I
MTR_8g099305 Medicago truncatula MTR_8g099305 I
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I
Sb04g009610 Sorghum bicolor Sb04g009610 I
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I
TCM_016416 Theobroma cacao TCM_016416 I
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I
Cla011101 Citrullus lanatus Cla011101 I
Pm024077 Prunus mume Pm024077 I
30190.m010807 Ricinus communis 30190.m010807 I
Cucsa.107270 Cucumis sativus Cucsa.107270 I
mgf015439m Mimulus guttatus mgf015439m I
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N
GLYMA08G02550 Glycine max GLYMA08G02550 N
Lus10033951.g Linum usitatissimum Lus10033951.g N
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N