Cla009422 (Citrullus lanatus)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cla009422 T195871_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.838 0.889
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.818 0.889
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.818 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla009422 GATA 29 64

Links

Other GATA family TFs
Other Citrullus lanatus TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I
GLYMA18G04500 Glycine max GLYMA18G04500 I
GLYMA11G33720 Glycine max GLYMA11G33720 I
MDP0000669451 Malus domestica MDP0000669451 I
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I
Pm014329 Prunus mume Pm014329 I
Ca_13295 Cicer arietinum Ca_13295 I
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N
mgf025772m Mimulus guttatus mgf025772m N
mgf008289m Mimulus guttatus mgf008289m N
Cucsa.280310 Cucumis sativus Cucsa.280310 N
Cucsa.006260 Cucumis sativus Cucsa.006260 N
cassava15077.m1 Manihot esculenta cassava15077.m1 N
cassava14484.m1 Manihot esculenta cassava14484.m1 N
29692.m000540 Ricinus communis 29692.m000540 N
28677.m000055 Ricinus communis 28677.m000055 N
Pm006304 Prunus mume Pm006304 N
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N
PK14700.1 Cannabis sativa PK14700.1 N
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N
MDP0000237978 Malus domestica MDP0000237978 N
Lus10033583.g Linum usitatissimum Lus10033583.g N
Lus10017626.g Linum usitatissimum Lus10017626.g N
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N
Carubv10018534m.g Capsella rubella Carubv10018534m.g N
Carubv10008833m.g Capsella rubella Carubv10008833m.g N
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N
OBART03G31370 Oryza barthii OBART03G31370 N
OB03G38380 Oryza brachyantha OB03G38380 N
MTR_3g065980 Medicago truncatula MTR_3g065980 N
MLOC_67940 Hordeum vulgare MLOC_67940 N
LPERR03G26000 Leersia perrieri LPERR03G26000 N
GRMZM2G144744 Zea mays GRMZM2G144744 N
GRMZM2G024973 Zea mays GRMZM2G024973 N
GLYMA08G10140 Glycine max GLYMA08G10140 N
GLYMA05G27190 Glycine max GLYMA05G27190 N
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N
OGLUM03G31610 Oryza glumaepatula OGLUM03G31610 N
F775_03572 Aegilops tauschii F775_03572 N
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N
Bra024875 Brassica rapa Bra024875 N
Bra017443 Brassica rapa Bra017443 N
Bo9g070200 Brassica oleracea Bo9g070200 N
Bo7g078550 Brassica oleracea Bo7g078550 N
SLR1 Oryza indica BGIOSGA013420 N
RGA Arabidopsis thaliana AT2G01570 N
GAI Arabidopsis thaliana AT1G14920 N
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N
Cla003996 Citrullus lanatus Cla003996 N
Ca_05046 Cicer arietinum Ca_05046 N
GAI1 Vitis vinifera VIT_01s0011g05260 N
Traes_4DS_ADBA6E30A Triticum aestivum Traes_4DS_ADBA6E30A N
Traes_4BS_2EE4988CD Triticum aestivum Traes_4BS_2EE4988CD N
TCM_019165 Theobroma cacao TCM_019165 N
TCM_010965 Theobroma cacao TCM_010965 N
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N
Si039400m.g Setaria italica Si039400m.g N
Sb01g010660 Sorghum bicolor Sb01g010660 N
Cla020062 Citrullus lanatus Cla020062 N
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N
SLR1 Oryza sativa OS03G0707600 N
ORUFI03G32650 Oryza rufipogon ORUFI03G32650 N
ORGLA03G0290200 Oryza glaberrima ORGLA03G0290200 N
OPUNC03G28530 Oryza punctata OPUNC03G28530 N
ONIVA03G32670 Oryza nivara ONIVA03G32670 N
OMERI03G27970 Oryza meridionalis OMERI03G27970 N