PAT1 (Arabidopsis thaliana)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03514 (GRAS) IPR005202 AT5G48150 T199843_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G48150.1 GRAS 119 490
AT5G48150.2 GRAS 119 490
AT5G48150.3 GRAS 119 490
AT5G48150.4 GRAS 119 490

Links

Other GRAS family TFs
Other Arabidopsis thaliana TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10015685m.g Capsella rubella Carubv10015685m.g N 0.728
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.835
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.832
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.737
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.851
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N 0.718
Eucgr.F03523 Eucalyptus grandis Eucgr.F03523 N 0.715
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.808
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.786
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.737
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.984
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.751
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.984
Cagra.1158s0007 Capsella grandiflora Cagra.1158s0007 N 0.725
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.978
Bostr.26675s0117 Boechera stricta Bostr.26675s0117 N 0.707
Bostr.19424s0023 Boechera stricta Bostr.19424s0023 N 0.742
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.745
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.778
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.808
cassava8885.m1 Manihot esculenta cassava8885.m1 N 0.743
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.762
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.786
PDK_20s1421311g003 Phoenix dactylifera PDK_20s1421311g003 N 0.731
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.726
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.727
PK15082.1 Cannabis sativa PK15082.1 N 0.726
PK09018.1 Cannabis sativa PK09018.1 N 0.789
Thhalv10011379m.g Eutrema salsugineum Thhalv10011379m.g N 0.715
Thhalv10004053m.g Eutrema salsugineum Thhalv10004053m.g N 0.938
Thhalv10002541m.g Eutrema salsugineum Thhalv10002541m.g N 0.729
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.843
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N 0.756
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.812
MDP0000804652 Malus domestica MDP0000804652 N 0.824
MDP0000284679 Malus domestica MDP0000284679 N 0.726
MDP0000205236 Malus domestica MDP0000205236 N 0.726
MDP0000152670 Malus domestica MDP0000152670 N 0.821
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.756
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.770
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.776
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.768
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N 0.737
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.824
Bra018860 Brassica rapa Bra018860 N 0.713
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.808
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.816
GSMUA_Achr8G03610_001 Musa acuminata GSMUA_Achr8G03610_001 N 0.722
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.821
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.816
SCL5 Arabidopsis lyrata fgenesh2_kg.1__4145__AT1G50600.1 N 0.713
Bra037509 Brassica rapa Bra037509 N 0.922
Bra036185 Brassica rapa Bra036185 N 0.940
Bra026077 Brassica rapa Bra026077 N 0.726
Bra020715 Brassica rapa Bra020715 N 0.957
PGSC0003DMG400022187 Solanum tuberosum PGSC0003DMG400022187 N 0.737
Bra015156 Brassica rapa Bra015156 N 0.723
Bo9g009260 Brassica oleracea Bo9g009260 N 0.949
Bo9g009240 Brassica oleracea Bo9g009240 N 0.940
Bo7g089080 Brassica oleracea Bo7g089080 N 0.924
Bo7g030310 Brassica oleracea Bo7g030310 N 0.723
Bo6g022330 Brassica oleracea Bo6g022330 N 0.713
Bo2g149670 Brassica oleracea Bo2g149670 N 0.962
SCL21 Arabidopsis thaliana AT2G04890 N 0.729
SCL5 Arabidopsis thaliana AT1G50600 N 0.713
TCM_030733 Theobroma cacao TCM_030733 N 0.772
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.780
29949.m000124 Ricinus communis 29949.m000124 N 0.821
27613.m000642 Ricinus communis 27613.m000642 N 0.772
Pm015021 Prunus mume Pm015021 N 0.835
Pm012019 Prunus mume Pm012019 N 0.753
Cla004565 Citrullus lanatus Cla004565 N 0.713
Cla001429 Citrullus lanatus Cla001429 N 0.797
Ca_09786 Cicer arietinum Ca_09786 N 0.816
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.767
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.835
AMTR_s00088p00161000 Amborella trichopoda AMTR_s00088p00161000 N 0.737
TCM_002319 Theobroma cacao TCM_002319 N 0.835
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N 0.745
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.808
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.984
SCL21 Arabidopsis lyrata scaffold_303269.1 N 0.736
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.729
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.837
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.840
SCL5 Populus trichocarpa POPTR_0001s37270 N 0.759