HCOI02102800 (Haemonchus contortus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 HCOI02102800 T234230_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.842 0.912
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.842 0.912
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.842 0.912
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.842 0.912
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.842 0.877
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.842 0.877
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.842 0.877
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.842 0.877
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.842 0.877
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.840 0.895
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.840 0.895
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.840 0.895
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.840 0.895
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.840 0.895
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.840 0.895
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.840 0.877
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.834 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HCOI02102800.t1 Homeodomain 173 229
HCOI02102800.t2 Homeodomain 175 231

Links

Other Homeodomain family TFs
Other Haemonchus contortus TFs

297 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EIL3 Arabidopsis thaliana AT1G73730 D
EIN3 Arabidopsis thaliana AT3G20770 D
OS09G0490200 Oryza sativa OS09G0490200 D
Q9ZWK1_TOBAC Nicotiana tabacum Q9ZWK1_TOBAC D
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D
AC234203.1_FG011 Zea mays AC234203.1_FG011 I
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I
BGIOSGA012535 Oryza indica BGIOSGA012535 I
BGIOSGA029545 Oryza indica BGIOSGA029545 I
Bo5g106280 Brassica oleracea Bo5g106280 I
Bo6g087550 Brassica oleracea Bo6g087550 I
Bo6g118030 Brassica oleracea Bo6g118030 I
Bra003831 Brassica rapa Bra003831 I
Bra008110 Brassica rapa Bra008110 I
Bra015970 Brassica rapa Bra015970 I
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I
BRADI3G39970 Brachypodium distachyon BRADI3G39970 I
BRADI4G33750 Brachypodium distachyon BRADI4G33750 I
F775_17920 Aegilops tauschii F775_17920 I
EIN3 Arabidopsis lyrata fgenesh2_kg.3__2304__AT3G20770.1 I
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I
GLYMA13G03660 Glycine max GLYMA13G03660 I
GLYMA13G41751 Glycine max GLYMA13G41751 I
GLYMA14G04550 Glycine max GLYMA14G04550 I
GLYMA15G03650 Glycine max GLYMA15G03650 I
GLYMA20G12250 Glycine max GLYMA20G12250 I
GRMZM2G006752 Zea mays GRMZM2G006752 I
GRMZM2G033570 Zea mays GRMZM2G033570 I
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I
GSMUA_Achr3G11160_001 Musa acuminata GSMUA_Achr3G11160_001 I
GSMUA_Achr8G25580_001 Musa acuminata GSMUA_Achr8G25580_001 I
GSMUA_Achr9G27680_001 Musa acuminata GSMUA_Achr9G27680_001 I
LPERR03G13760 Leersia perrieri LPERR03G13760 I
LPERR08G16890 Leersia perrieri LPERR08G16890 I
LPERR09G10870 Leersia perrieri LPERR09G10870 I
MLOC_10315 Hordeum vulgare MLOC_10315 I
MLOC_10823 Hordeum vulgare MLOC_10823 I
MTR_2g098470 Medicago truncatula MTR_2g098470 I
MTR_3g078770 Medicago truncatula MTR_3g078770 I
OB08G26880 Oryza brachyantha OB08G26880 I
OB09G21280 Oryza brachyantha OB09G21280 I
OBART08G19960 Oryza barthii OBART08G19960 I
OBART09G14750 Oryza barthii OBART09G14750 I
OGLUM03G15860 Oryza glumaepatula OGLUM03G15860 I
OGLUM08G21190 Oryza glumaepatula OGLUM08G21190 I
OGLUM09G15380 Oryza glumaepatula OGLUM09G15380 I
OMERI03G14140 Oryza meridionalis OMERI03G14140 I
OMERI05G02190 Oryza meridionalis OMERI05G02190 I
OMERI08G16770 Oryza meridionalis OMERI08G16770 I
OMERI09G11470 Oryza meridionalis OMERI09G11470 I
ONIVA03G16680 Oryza nivara ONIVA03G16680 I
ONIVA08G17420 Oryza nivara ONIVA08G17420 I
ONIVA08G22530 Oryza nivara ONIVA08G22530 I
OPUNC03G15240 Oryza punctata OPUNC03G15240 I
OPUNC08G18080 Oryza punctata OPUNC08G18080 I
OPUNC09G13210 Oryza punctata OPUNC09G13210 I
ORGLA03G0150600 Oryza glaberrima ORGLA03G0150600 I
ORGLA09G0113600 Oryza glaberrima ORGLA09G0113600 I
ORUFI03G16290 Oryza rufipogon ORUFI03G16290 I
ORUFI08G22370 Oryza rufipogon ORUFI08G22370 I
ORUFI09G15900 Oryza rufipogon ORUFI09G15900 I
OS03G0324200 Oryza sativa OS03G0324200 I
OS03G0324300 Oryza sativa OS03G0324300 I
OS08G0508700 Oryza sativa OS08G0508700 I
PGSC0003DMG400005914 Solanum tuberosum PGSC0003DMG400005914 I
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I
PGSC0003DMG400021381 Solanum tuberosum PGSC0003DMG400021381 I
PGSC0003DMG400027507 Solanum tuberosum PGSC0003DMG400027507 I
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I
POPTR_0001s05370 Populus trichocarpa POPTR_0001s05370 I
POPTR_0003s22090 Populus trichocarpa POPTR_0003s22090 I
POPTR_0009s16080 Populus trichocarpa POPTR_0009s16080 I
PRUPE_ppa003113mg Prunus persica PRUPE_ppa003113mg I
Sb01g036740 Sorghum bicolor Sb01g036740 I
Sb02g028390 Sorghum bicolor Sb02g028390 I
Sb07g027790 Sorghum bicolor Sb07g027790 I
EIL3 Arabidopsis lyrata scaffold_202309.1 I
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I
Si013426m.g Setaria italica Si013426m.g I
Si029259m.g Setaria italica Si029259m.g I
Si034616m.g Setaria italica Si034616m.g I
Solyc01g006650.1 Solanum lycopersicum Solyc01g006650.1 I
Solyc01g009170.2 Solanum lycopersicum Solyc01g009170.2 I
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I
Solyc01g096810.2 Solanum lycopersicum Solyc01g096810.2 I
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I
Solyc06g073730.1 Solanum lycopersicum Solyc06g073730.1 I
TCM_040510 Theobroma cacao TCM_040510 I
TCM_042022 Theobroma cacao TCM_042022 I
Traes_4BL_F34EBD618 Triticum aestivum Traes_4BL_F34EBD618 I
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I
Traes_5AL_B65EF5518 Triticum aestivum Traes_5AL_B65EF5518 I
Traes_5BL_B6051DD37 Triticum aestivum Traes_5BL_B6051DD37 I
Traes_5DL_62DEF8361 Triticum aestivum Traes_5DL_62DEF8361 I
Traes_7AS_34D476D5D1 Triticum aestivum Traes_7AS_34D476D5D1 I
Traes_7BS_733347AC0 Triticum aestivum Traes_7BS_733347AC0 I
Traes_7DS_3673F1C73 Triticum aestivum Traes_7DS_3673F1C73 I
TRIUR3_28079 Triticum urartu TRIUR3_28079 I
EIL3 Vitis vinifera VIT_06s0004g01610 I
VIT_13s0047g00250 Vitis vinifera VIT_13s0047g00250 I
Ca_02669 Cicer arietinum Ca_02669 I
Cla006390 Citrullus lanatus Cla006390 I
Pm028171 Prunus mume Pm028171 I
29708.m000185 Ricinus communis 29708.m000185 I
30169.m006395 Ricinus communis 30169.m006395 I
cassava2120.valid.m1 Manihot esculenta cassava2120.valid.m1 I
cassava30700.valid.m1 Manihot esculenta cassava30700.valid.m1 I
cassava3620.m1 Manihot esculenta cassava3620.m1 I
Cucsa.142750 Cucumis sativus Cucsa.142750 I
Cucsa.143220 Cucumis sativus Cucsa.143220 I
Cucsa.364340 Cucumis sativus Cucsa.364340 I
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I
mgf020935m Mimulus guttatus mgf020935m I
Aquca_007_00017 Aquilegia coerulea Aquca_007_00017 I
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I
Bostr.19424s0573 Boechera stricta Bostr.19424s0573 I
Bostr.3288s0016 Boechera stricta Bostr.3288s0016 I
Cagra.0876s0005 Capsella grandiflora Cagra.0876s0005 I
Cagra.2243s0007 Capsella grandiflora Cagra.2243s0007 I
Carubv10013213m.g Capsella rubella Carubv10013213m.g I
Carubv10020043m.g Capsella rubella Carubv10020043m.g I
Ciclev10000608m.g Citrus clementina Ciclev10000608m.g I
Ciclev10000617m.g Citrus clementina Ciclev10000617m.g I
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I
gene20650-v1.0-hybrid Fragaria vesca gene20650-v1.0-hybrid I
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I
Gorai.009G071400 Gossypium raimondii Gorai.009G071400 I
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I
Gorai.010G128700 Gossypium raimondii Gorai.010G128700 I
Gorai.013G250300 Gossypium raimondii Gorai.013G250300 I
Lus10031245.g Linum usitatissimum Lus10031245.g I
Lus10031817.g Linum usitatissimum Lus10031817.g I
MDP0000202831 Malus domestica MDP0000202831 I
MDP0000490180 Malus domestica MDP0000490180 I
MDP0000562585 Malus domestica MDP0000562585 I
MDP0000565880 Malus domestica MDP0000565880 I
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I
orange1.1g007174m.g Citrus sinensis orange1.1g007174m.g I
orange1.1g007662m.g Citrus sinensis orange1.1g007662m.g I
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I
Pavir.Fa00424 Panicum virgatum Pavir.Fa00424 I
Pavir.Fb01951 Panicum virgatum Pavir.Fb01951 I
Pavir.Ia03450 Panicum virgatum Pavir.Ia03450 I
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I
Pavir.J02229 Panicum virgatum Pavir.J02229 I
Pavir.J14329 Panicum virgatum Pavir.J14329 I
SapurV1A.0009s0320 Salix purpurea SapurV1A.0009s0320 I
SapurV1A.0615s0150 Salix purpurea SapurV1A.0615s0150 I
SapurV1A.0850s0030 Salix purpurea SapurV1A.0850s0030 I
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I
Thhalv10018327m.g Eutrema salsugineum Thhalv10018327m.g I
PK13351.1 Cannabis sativa PK13351.1 I
PK19114.1 Cannabis sativa PK19114.1 I
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I
PDK_20s1301801g002 Phoenix dactylifera PDK_20s1301801g002 I